AT1G76405

Outer envelope pore protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28661789 .. 28663826
2038 bp
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UTR
Exon/CDS
Intron
AT1G76405.2

Sequence Viewer

Length: 180 bp
ATGGAGACTTCTATGAGGTATACCAGCAATTCCAAGTCTATGAAGATTCATGCCAAAGAGAAGGTTCCGGTGAACTCAAAAACCCATTTACAGCTTCATGGAGAGTTAGATACTGGAACTGGGGCTCCGAGTTACTTCTGTGCGATGATTAGACACTTTTTTCCTGAGGCCTTGGGGTAG

Protein Analysis

59

Amino Acids

6.61

Weight (kDa)

8.93

Isoelectric Point (pI)

20.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20816 AT1G76405 AT1G76405
fragaria_vesca FvH4_5g25920
malus_domestica MD06G1005500.v1.1
prunus_persica Prupe.5G006800_v2.0.a1 Prupe.5G006800_v2.0.a1
pyrus_communis pycom06g00510
rosa_chinensis RchiOBHm_Chr7g0216421
rosa_laevigata RLG00000002571
rosa_multiflora Rmu_sc0038813.1_g000002
rosa_roxburghii Rroxscaffold_3G00243250
rosa_rugosa Rorug07G0160300
rosa_samantha Rh7BG290800 Rh7DG300600
rosa_wichuraiana Rw7G025440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 109, 141
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AoxI GGCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 82
AxyI CCTNAGG 1 cut(s) 165
BanII GRGCYC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 66, 126
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bse1I ACTGG 2 cut(s) 118, 124
Bse21I CCTNAGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 118, 124
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 127
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 66, 126
BsrI ACTGG 2 cut(s) 118, 124
BssECI CCNNGG 1 cut(s) 171
BssNAI GTATAC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 165
BstZ17I GTATAC 1 cut(s) 21
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 158
CviAII CATG 2 cut(s) 50, 98
CviJI RGCY 3 cut(s) 94, 125, 170
CviKI_1 RGCY 3 cut(s) 94, 125, 170
DdeI CTNAG 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 2 cut(s) 53, 101
FaiI YATR 5 cut(s) 14, 21, 41, 51, 99
FatI CATG 2 cut(s) 49, 97
FblI GTMKAC 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 68
Hin1II CATG 2 cut(s) 53, 101
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 21, 73
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 21, 73
HpyAV CCTTC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 2 cut(s) 53, 101
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 37, 81, 99, 105
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 1 cut(s) 28
MnlI CCTC 2 cut(s) 9, 160
MspI CCGG 1 cut(s) 68
NlaIII CATG 2 cut(s) 53, 101
NlaIV GGNNCC 2 cut(s) 66, 126
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 66, 126
SduI GDGCHC 1 cut(s) 127
SetI ASST 3 cut(s) 20, 66, 96
SgeI CNNG 9 cut(s) 36, 46, 62, 80, 110, 126, 132, 141, 176
Sse9I AATT 1 cut(s) 28
SseBI AGGCCT 1 cut(s) 170
StuI AGGCCT 1 cut(s) 170
StyI CCWWGG 1 cut(s) 171
TasI AATT 1 cut(s) 28
TfiI GAWTC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 38, 56, 86
XmiI GTMKAC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.