Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015194

Physical Location & Seq

Genomic Coordinates Reverse (-)

7529705 .. 7531108

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCGCCAGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTTCCACCAATTAATCGCAGGACAATTTTGGTGGGGCTAGGCGGTGCGCTATGGAGTTGGAACGCTCTGGCCGCTAAGGAGGAGGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCTAAGGAGAAGAAAGACCCGACCGTGACCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAGCGTAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTTGAAGCAAAACCATCCTCTTCTTCTTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.26

Weight (kDa)

10.66

Isoelectric Point (pI)

76.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21500
fragaria_vesca	FvH4_1g00500
malus_domestica	MD02G1004100.v1.1 MD15G1147800.v1.1
prunus_persica	Prupe.7G267000_v2.0.a1
pyrus_communis	pycom02g00260
rosa_chinensis	RchiOBHm_Chr2g0085131
rosa_laevigata	RLG00000015658
rosa_multiflora	Rmu_sc0001196.1_g000016 Rmu_sc0008647.1_g000013
rosa_rugosa	Rorug01G0457800
rosa_samantha	Rh2AG006100 Rh2BG006800 Rh2CG007600 Rh2DG007600
rosa_wichuraiana	Rw2G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	8 cut(s)	45, 68, 70, 80, 147, 177, 197, 212
AcoI	YGGCCR	2 cut(s)	174, 209
AcuI	CTGAAG	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	350
AoxI	GGCC	3 cut(s)	174, 209, 264
ApeKI	GCWGC	2 cut(s)	35, 200
AseI	ATTAAT	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	21
AxyI	CCTNAGG	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	22, 212
BccI	CCATC	2 cut(s)	70, 367
BceAI	ACGGC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	8 cut(s)	36, 45, 68, 80, 177, 198, 201, 212
BlsI	GCNGC	8 cut(s)	37, 46, 69, 81, 178, 199, 202, 213
BmiI	GGNNCC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	68, 267
BsaWI	WCCGGW	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	198, 312
BseDI	CCNNGG	2 cut(s)	68, 267
BseGI	GGATG	1 cut(s)	359
BseMI	GCAATG	2 cut(s)	198, 312
BseRI	GAGGAG	3 cut(s)	46, 78, 200
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	22, 212
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	2 cut(s)	212, 249
BshFI	GGCC	3 cut(s)	176, 211, 266
BsiEI	CGRYCG	2 cut(s)	212, 249
BsiSI	CCGG	2 cut(s)	32, 255
BsnI	GGCC	3 cut(s)	176, 211, 266
BspACI	CCGC	8 cut(s)	45, 68, 70, 80, 147, 177, 197, 212
BspANI	GGCC	3 cut(s)	176, 211, 266
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	198, 312
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	68, 267
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	180, 228, 323
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	154
BstMCI	CGRYCG	2 cut(s)	212, 249
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 44, 76, 176, 197, 314
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	22, 212
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstZI	CGGCCG	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	176, 211, 266
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	359
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	31
Cfr42I	CCGCGG	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviJI	RGCY	7 cut(s)	35, 86, 142, 176, 211, 266, 308
CviKI_1	RGCY	7 cut(s)	35, 86, 142, 176, 211, 266, 308
DdeI	CTNAG	3 cut(s)	180, 228, 323
EaeI	YGGCCR	2 cut(s)	174, 209
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaiI	YATR	1 cut(s)	157
Fnu4HI	GCNGC	8 cut(s)	36, 45, 68, 80, 177, 198, 201, 212
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	8 cut(s)	36, 45, 68, 80, 177, 198, 201, 212
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	8 cut(s)	36, 45, 68, 80, 177, 198, 201, 212
HaeIII	GGCC	3 cut(s)	176, 211, 266
HapII	CCGG	2 cut(s)	32, 255
HhaI	GCGC	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	2 cut(s)	32, 255
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 44, 76, 176, 197, 314
HpyF3I	CTNAG	3 cut(s)	180, 228, 323
HspAI	GCGC	1 cut(s)	152
KspI	CCGCGG	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	45, 61, 68, 109, 158, 248, 268, 354
Lsp1109I	GCAGC	2 cut(s)	22, 212
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	72, 250
MboII	GAAGA	5 cut(s)	247, 308, 357, 360, 363
MluCI	AATT	2 cut(s)	114, 129
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	33, 67, 99, 178, 181, 225, 373
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	32, 255
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	6 cut(s)	41, 44, 76, 176, 197, 314
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	72, 250
PkrI	GCNGC	8 cut(s)	37, 46, 69, 81, 178, 199, 202, 213
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	87
SacII	CCGCGG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	8 cut(s)	36, 45, 68, 80, 177, 198, 201, 212
SchI	GAGTC	1 cut(s)	45
SetI	ASST	3 cut(s)	229, 273, 343
Sfr303I	CCGCGG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	114, 129
SsiI	CCGC	8 cut(s)	45, 68, 70, 80, 147, 177, 197, 212
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	250
TasI	AATT	2 cut(s)	114, 129
TauI	GCSGC	6 cut(s)	47, 70, 82, 179, 200, 214
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	72, 250
TseI	GCWGC	2 cut(s)	35, 200
Tsp45I	GTSAC	2 cut(s)	72, 250
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	117
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.