pycom02g00260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015194
Physical Location & Seq
Reverse (-)
156627 .. 157668
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00260.3

Sequence Viewer

Length: 513 bp
ATGGATCGGCCATGTACGTTCAAGTTTCTAAAGATTTTCCCCACATCTTCACTATTGACAAGAAGAGTACAGCATATTTTACAAGTGACGGAGATTATGGCGCATCCACTTGCGTCACCGCCACCCACCACCGCCGCAGTAGCAACAATCTCAACAGCGGCAACTAACAAGACTACGCGTTACTGGTCAGTTGGTTTCCGAAATGTCAGGGCTTCCCATCAAGCTTCCGATGACCCCCATGCCGTGAACAATAATCTCGTTAACCGCAGGACTGTGGGTTTGGGTTTGGCGGCTGCTGCTCTGAGCTTCAATGTGAGTAACCCAAATTCAAGTGCAAATGCGGCAGCCAGGAGGCCTCCACCGCCTCCGGCGGAGGAGAAGGAGAAAAAGGACCCTAATGTGAGCGGTGTTTTAGCAAAAGTGCTAGCAAGCAAAAAGAGAAAGGAGGCCATGAAACAATCGGTGGCCAAGCTAAGAGACAAAGGGAAGCCTATCCAAGAGCCATCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.4

Weight (kDa)

10.54

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21500
fragaria_vesca FvH4_1g00500
malus_domestica MD02G1004100.v1.1 MD15G1147800.v1.1
prunus_persica Prupe.7G267000_v2.0.a1
pyrus_communis pycom02g00260
rosa_chinensis RchiOBHm_Chr2g0085131
rosa_laevigata RLG00000015658
rosa_multiflora Rmu_sc0001196.1_g000016 Rmu_sc0008647.1_g000013
rosa_rugosa Rorug01G0457800
rosa_samantha Rh2AG006100 Rh2BG006800 Rh2CG007600 Rh2DG007600
rosa_wichuraiana Rw2G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 405
AccII CGCG 1 cut(s) 178
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 8, 465
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 2 cut(s) 16, 69
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 22, 310, 330
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 3 cut(s) 224, 306, 472
AluI AGCT 3 cut(s) 224, 306, 472
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 8, 353, 447, 465
ApeKI GCWGC 3 cut(s) 293, 296, 344
ApoI RAATTY 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 108
AsuNHI GCTAGC 1 cut(s) 424
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 467
BbvI GCAGC 3 cut(s) 280, 283, 356
BccI CCATC 2 cut(s) 225, 511
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 425
BisI GCNGC 7 cut(s) 135, 159, 291, 294, 297, 342, 345
BlsI GCNGC 7 cut(s) 136, 160, 292, 295, 298, 343, 346
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 112
BmtI GCTAGC 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 280, 283, 356
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 4 cut(s) 10, 355, 449, 467
BsiSI CCGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 471
BsnI GGCC 4 cut(s) 10, 355, 449, 467
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 4 cut(s) 10, 355, 449, 467
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 393
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 405
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 426, 430
BstDEI CTNAG 2 cut(s) 302, 473
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 4 cut(s) 140, 296, 341, 361
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 280, 283, 356
BsuRI GGCC 4 cut(s) 10, 355, 449, 467
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 426, 430
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 15, 68
CviAII CATG 3 cut(s) 12, 239, 451
CviQI GTAC 2 cut(s) 15, 68
DdeI CTNAG 2 cut(s) 302, 473
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 2 cut(s) 8, 465
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 15, 242, 454
FaiI YATR 5 cut(s) 13, 75, 98, 240, 452
FatI CATG 3 cut(s) 11, 238, 450
Fnu4HI GCNGC 7 cut(s) 135, 159, 291, 294, 297, 342, 345
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 7 cut(s) 135, 159, 291, 294, 297, 342, 345
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 102
GluI GCNGC 7 cut(s) 135, 159, 291, 294, 297, 342, 345
HaeIII GGCC 4 cut(s) 10, 355, 449, 467
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 15, 242, 454
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 222
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 247, 262
Hpy188I TCNGA 4 cut(s) 200, 229, 303, 508
Hpy8I GTNNAC 2 cut(s) 247, 262
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 296, 341, 361
HpyF3I CTNAG 2 cut(s) 302, 473
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 3 cut(s) 15, 242, 454
HspAI GCGC 1 cut(s) 101
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 169, 193, 253, 334, 361, 381
Lsp1109I GCAGC 3 cut(s) 280, 283, 356
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 4 cut(s) 85, 114, 179, 317
MalI GATC 1 cut(s) 6
MbiI CCGCTC 1 cut(s) 405
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 39, 75
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 1 cut(s) 325
MluI ACGCGT 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 467
MnlI CCTC 5 cut(s) 345, 366, 367, 375, 439
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 140, 296, 341, 361
NdeII GATC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 3 cut(s) 15, 242, 454
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 85, 114
PceI AGGCCT 1 cut(s) 355
PkrI GCNGC 7 cut(s) 136, 160, 292, 295, 298, 343, 346
PpuMI RGGWCCY 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 16, 69
RsaNI GTAC 2 cut(s) 15, 68
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 7 cut(s) 135, 159, 291, 294, 297, 342, 345
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 349
SetI ASST 4 cut(s) 20, 226, 308, 474
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 391
Sse9I AATT 1 cut(s) 325
SseBI AGGCCT 1 cut(s) 355
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 67
TauI GCSGC 4 cut(s) 137, 161, 293, 344
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 2 cut(s) 85, 114
TseI GCWGC 3 cut(s) 293, 296, 344
Tsp45I GTSAC 2 cut(s) 85, 114
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 1 cut(s) 325
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.