MD15G1147800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015194
Physical Location & Seq
Reverse (-)
10950155 .. 10951442
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1147800.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGCGCATTCGATAGCGTCGCCGCCACCTACCACTGCCGCAGCAACATCAATCTCAACAGCAGCGGCTAAAAAGACCGCTAGTTTCCGGTCAGTGGGATTCCAAAACGTCAGGCCTTCCGATCAAGTTTCCGATGACTCCAATGCCGCGAACAATAATCTCGTTCACAGGAGGAATGTGGGTTTGGGTTTGGCGGGCGCTGTACTGAGCTTCACTGTGGGCGACCCAAATTCAAGTGCAAATGCGGCAGCCAGAAGGCCTCCGCCGCCTGCGGCGCAGGAGGAGAAGGAGAAAAAGGACCCGAACGTCAGTGGTGTTTTAGCGAAGGTCCTAGCTAGCAAAAAGAGGAAGGAGGCCATGAAACAATCGGTGGCGAAGCTAAGAGAGAAAGGAAAACCGATCCAAGCGCCATCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.42

Weight (kDa)

10.33

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21500
fragaria_vesca FvH4_1g00500
malus_domestica MD02G1004100.v1.1 MD15G1147800.v1.1
prunus_persica Prupe.7G267000_v2.0.a1
pyrus_communis pycom02g00260
rosa_chinensis RchiOBHm_Chr2g0085131
rosa_laevigata RLG00000015658
rosa_multiflora Rmu_sc0001196.1_g000016 Rmu_sc0008647.1_g000013
rosa_rugosa Rorug01G0457800
rosa_samantha Rh2AG006100 Rh2BG006800 Rh2CG007600 Rh2DG007600
rosa_wichuraiana Rw2G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccII CGCG 1 cut(s) 149
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 210, 335, 379
AluI AGCT 3 cut(s) 210, 335, 379
AlwI GGATC 1 cut(s) 394
AoxI GGCC 3 cut(s) 113, 257, 354
ApeKI GCWGC 3 cut(s) 41, 62, 248
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 4 cut(s) 7, 200, 277, 409
AspS9I GGNCC 2 cut(s) 298, 328
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 2 cut(s) 298, 328
BbvI GCAGC 3 cut(s) 53, 74, 260
BccI CCATC 1 cut(s) 418
BfaI CTAG 3 cut(s) 81, 332, 336
BfoI RGCGCY 2 cut(s) 201, 410
Bme18I GGWCC 2 cut(s) 298, 328
BmgT120I GGNCC 2 cut(s) 298, 328
BmiI GGNNCC 1 cut(s) 300
BmtI GCTAGC 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 53, 74, 260
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 115, 259, 356
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 94
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 3 cut(s) 115, 259, 356
Bsp143I GATC 2 cut(s) 121, 399
BspANI GGCC 3 cut(s) 115, 259, 356
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 300
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 1 cut(s) 394
BssMI GATC 2 cut(s) 121, 399
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 196, 270, 337
BstDEI CTNAG 2 cut(s) 206, 380
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 2 cut(s) 201, 410
BstHHI GCGC 4 cut(s) 7, 200, 277, 409
BstKTI GATC 2 cut(s) 124, 402
BstMBI GATC 2 cut(s) 121, 399
BstMWI GCNNNNNNNGC 3 cut(s) 245, 265, 274
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 53, 74, 260
BsuRI GGCC 3 cut(s) 115, 259, 356
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 99, 213, 316
Cac8I GCNNGC 3 cut(s) 196, 270, 337
CfoI GCGC 4 cut(s) 7, 200, 277, 409
Cfr13I GGNCC 2 cut(s) 298, 328
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 358
CviJI RGCY 8 cut(s) 68, 115, 210, 251, 259, 335, 356, 379
CviKI_1 RGCY 8 cut(s) 68, 115, 210, 251, 259, 335, 356, 379
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 206, 380
DpnI GATC 2 cut(s) 123, 401
DpnII GATC 2 cut(s) 121, 399
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 252
Eco147I AGGCCT 2 cut(s) 115, 259
Eco47I GGWCC 2 cut(s) 298, 328
EcoO109I RGGNCCY 2 cut(s) 298, 328
FaeI CATG 1 cut(s) 361
FaiI YATR 1 cut(s) 359
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 187
FspBI CTAG 3 cut(s) 81, 332, 336
GlaI GCGC 4 cut(s) 6, 199, 276, 408
HaeII RGCGCY 2 cut(s) 201, 410
HaeIII GGCC 3 cut(s) 115, 259, 356
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 6
HhaI GCGC 4 cut(s) 7, 200, 277, 409
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 4 cut(s) 5, 198, 275, 407
HinP1I GCGC 4 cut(s) 5, 198, 275, 407
HinfI GANTC 2 cut(s) 99, 137
HpaII CCGG 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 121, 133, 415
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 126, 249, 280, 319, 343
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 108, 306
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 265, 274
HpyF3I CTNAG 2 cut(s) 206, 380
HpySE526I ACGT 2 cut(s) 108, 306
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 4 cut(s) 5, 198, 275, 407
Kzo9I GATC 2 cut(s) 121, 399
LpnPI CCDG 6 cut(s) 97, 101, 154, 263, 265, 282
Lsp1109I GCAGC 3 cut(s) 53, 74, 260
MaeI CTAG 3 cut(s) 81, 332, 336
MaeII ACGT 2 cut(s) 108, 306
MalI GATC 2 cut(s) 123, 401
MboI GATC 2 cut(s) 121, 399
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 5 cut(s) 165, 270, 274, 339, 346
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 7
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 245, 265, 274
NdeII GATC 2 cut(s) 121, 399
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 300
PceI AGGCCT 2 cut(s) 115, 259
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 99
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 2 cut(s) 298, 328
Psp5II RGGWCCY 2 cut(s) 298, 328
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 298, 328
PspPPI RGGWCCY 2 cut(s) 298, 328
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 121, 399
Sau96I GGNCC 2 cut(s) 298, 328
SchI GAGTC 1 cut(s) 131
SetI ASST 7 cut(s) 31, 111, 212, 309, 330, 337, 381
SinI GGWCC 2 cut(s) 298, 328
Sse9I AATT 1 cut(s) 229
SseBI AGGCCT 2 cut(s) 115, 259
SspMI CTAG 3 cut(s) 81, 332, 336
StuI AGGCCT 2 cut(s) 115, 259
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 2 cut(s) 111, 309
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 202
TauI GCSGC 7 cut(s) 25, 41, 68, 149, 248, 268, 275
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 4 cut(s) 40, 99, 220, 316
TseI GCWGC 3 cut(s) 41, 62, 248
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 4 cut(s) 40, 99, 220, 316
VpaK11BI GGWCC 2 cut(s) 298, 328
XapI RAATTY 1 cut(s) 229
XspI CTAG 3 cut(s) 81, 332, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.