Rh2DG007600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015194
Physical Location & Seq
Reverse (-)
452183 .. 452642
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG007600.1

Sequence Viewer

Length: 378 bp
ATGACTCATTCTCTGGCCTCGCCGCCGGCAACTGCGACAACGCCAATCTCAGCAAGTTCCAAGAGCAATATCCATTTTCCGTCGTCTCTCAAAGTCAGGGCTTGCCACCAAGTTTCAGATGGTCCTAACAAACTTGTTCACCGCAGGGCTGTGGGCTTGGGTTTGGCTGGTGCTGTGCTGAGCTTTATTGTGGGTGACCGGAGTGCGAATGCAGCTGCCAGAAGGCCGCCGCCGCCTCCGGTTGACGAGAAAAGGGAGAAGAACGATCCCAATGTGAGCGGTGCTCTTGCAAAAGTGTTAGCTAGCAAAAAGAGAAAGGAAGCCATGAAGGAAGCCATGGCCAAGCTAAGAGAGAAAGGGAAGCCTGTGCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.19

Weight (kDa)

10.48

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21500
fragaria_vesca FvH4_1g00500
malus_domestica MD02G1004100.v1.1 MD15G1147800.v1.1
prunus_persica Prupe.7G267000_v2.0.a1
pyrus_communis pycom02g00260
rosa_chinensis RchiOBHm_Chr2g0085131
rosa_laevigata RLG00000015658
rosa_multiflora Rmu_sc0001196.1_g000016 Rmu_sc0008647.1_g000013
rosa_rugosa Rorug01G0457800
rosa_samantha Rh2AG006100 Rh2BG006800 Rh2CG007600 Rh2DG007600
rosa_wichuraiana Rw2G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 279
AciI CCGC 6 cut(s) 23, 142, 227, 230, 233, 279
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 339
AluBI AGCT 4 cut(s) 183, 215, 302, 346
AluI AGCT 4 cut(s) 183, 215, 302, 346
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 260
AoxI GGCC 3 cut(s) 15, 224, 339
ApeKI GCWGC 2 cut(s) 212, 215
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 131, 206
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 202, 224
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 303
BisI GCNGC 6 cut(s) 23, 213, 216, 227, 230, 233
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 6 cut(s) 24, 214, 217, 228, 231, 234
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmtI GCTAGC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu1102I GCTNAGC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 2 cut(s) 198, 238
Bse118I RCCGGY 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 63, 170
BseXI GCAGC 2 cut(s) 202, 224
BshFI GGCC 3 cut(s) 17, 226, 341
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 3 cut(s) 26, 199, 239
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 3 cut(s) 17, 226, 341
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 6 cut(s) 23, 142, 227, 230, 233, 279
BspANI GGCC 3 cut(s) 17, 226, 341
BspCNI CTCAG 2 cut(s) 62, 171
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 27, 103, 304
BstDEI CTNAG 3 cut(s) 49, 179, 347
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 194
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 212, 232
BstPI GGTNACC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 202, 224
BsuRI GGCC 3 cut(s) 17, 226, 341
BtgI CCRYGG 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 27, 103, 304
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 2 cut(s) 325, 337
DdeI CTNAG 3 cut(s) 49, 179, 347
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 122
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 328, 340
FaiI YATR 2 cut(s) 326, 338
FatI CATG 2 cut(s) 324, 336
Fnu4HI GCNGC 6 cut(s) 23, 213, 216, 227, 230, 233
Fsp4HI GCNGC 6 cut(s) 23, 213, 216, 227, 230, 233
FspBI CTAG 1 cut(s) 303
GluI GCNGC 6 cut(s) 23, 213, 216, 227, 230, 233
HaeIII GGCC 3 cut(s) 17, 226, 341
HapII CCGG 3 cut(s) 26, 199, 239
Hin1II CATG 2 cut(s) 328, 340
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 4
HpaII CCGG 3 cut(s) 26, 199, 239
HphI GGTGA 2 cut(s) 131, 206
Hpy166II GTNNAC 2 cut(s) 139, 244
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 139, 244
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 216, 322
HpyCH4V TGCA 2 cut(s) 212, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 232
HpyF3I CTNAG 3 cut(s) 49, 179, 347
Hsp92II CATG 2 cut(s) 328, 340
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 39, 82, 130, 153, 212, 232, 252
Lsp1109I GCAGC 2 cut(s) 202, 224
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 267
MbiI CCGCTC 1 cut(s) 279
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 341
MluNI TGGCCA 1 cut(s) 341
MnlI CCTC 2 cut(s) 28, 246
Mox20I TGGCCA 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 3 cut(s) 26, 199, 239
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 212, 232
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 1 cut(s) 336
NdeII GATC 1 cut(s) 265
NgoMIV GCCGGC 1 cut(s) 25
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 328, 340
NmuCI GTSAC 1 cut(s) 194
PctI GAATGC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 24, 214, 217, 228, 231, 234
PspEI GGTNACC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 215
SatI GCNGC 6 cut(s) 23, 213, 216, 227, 230, 233
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 185, 217, 304, 348
SinI GGWCC 1 cut(s) 122
SsiI CCGC 6 cut(s) 23, 142, 227, 230, 233, 279
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 336
TauI GCSGC 4 cut(s) 25, 229, 232, 235
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 212, 215
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.