MD02G1004100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015194
Physical Location & Seq
Reverse (-)
288421 .. 289495
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1004100.v1.1.491

Sequence Viewer

Length: 417 bp
ATGGCGCATCCACTTGCGTCACCGCCACCTACCACCGCCGCAGCAGCAACAATCTCAACGGCGGCAACTAACAAGACTACCCGTTACCGGTCGGTTGGTTTCCGAAATGTCAGTGCTTCCCATCAAGCTTCCGATGACCCTCATGCCGCGAAAAATAATCTCGTTAACCGCAGGACTGTGGGTTTGGGTTTGGCGGCTGCTGCTCTGAGCTTCAATGTGAGTAACCCAAATTCAAGTGCAAATGCGGCAGCCAGGAGGCCTCCGCCGCCTCCGGCGGAGGAGAAGGAGAAAAGGGACCCTAATGTGAGCGGTGTTTTAGCAAAAGTGCTAGCAAGCAAAAAGAGGAAGGAGGCCATGAAACAATCTGTGGCCAAACTAAGAGACAAAGGGAAGCCTATCCAAGAGCCATCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.48

Weight (kDa)

10.64

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21500
fragaria_vesca FvH4_1g00500
malus_domestica MD02G1004100.v1.1 MD15G1147800.v1.1
prunus_persica Prupe.7G267000_v2.0.a1
pyrus_communis pycom02g00260
rosa_chinensis RchiOBHm_Chr2g0085131
rosa_laevigata RLG00000015658
rosa_multiflora Rmu_sc0001196.1_g000016 Rmu_sc0008647.1_g000013
rosa_rugosa Rorug01G0457800
rosa_samantha Rh2AG006100 Rh2BG006800 Rh2CG007600 Rh2DG007600
rosa_wichuraiana Rw2G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 309
AccII CGCG 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 87
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 214, 234
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 2 cut(s) 128, 210
AluI AGCT 2 cut(s) 128, 210
Alw26I GTCTC 1 cut(s) 375
AoxI GGCC 3 cut(s) 257, 351, 369
ApeKI GCWGC 5 cut(s) 41, 44, 197, 200, 248
ApoI RAATTY 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AsiGI ACCGGT 1 cut(s) 87
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 12
AsuNHI GCTAGC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 371
BbvI GCAGC 5 cut(s) 53, 56, 184, 187, 260
BccI CCATC 2 cut(s) 129, 415
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 296, 297
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 16
BmtI GCTAGC 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 87
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 7
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 5 cut(s) 53, 56, 184, 187, 260
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 3 cut(s) 259, 353, 371
BshTI ACCGGT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 88, 272
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 3 cut(s) 259, 353, 371
BspANI GGCC 3 cut(s) 259, 353, 371
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 296, 297
BspOI GCTAGC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 330, 334
BstDEI CTNAG 2 cut(s) 206, 377
BstF5I GGATG 1 cut(s) 7
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 375
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 4 cut(s) 44, 200, 245, 265
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 53, 56, 184, 187, 260
BsuRI GGCC 3 cut(s) 259, 353, 371
BtsCI GGATG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 330, 334
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 6
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 2 cut(s) 143, 355
CviJI RGCY 9 cut(s) 128, 197, 210, 251, 259, 353, 371, 394, 406
CviKI_1 RGCY 9 cut(s) 128, 197, 210, 251, 259, 353, 371, 394, 406
DdeI CTNAG 2 cut(s) 206, 377
EaeI YGGCCR 1 cut(s) 369
EciI GGCGGA 2 cut(s) 252, 290
Eco147I AGGCCT 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 2 cut(s) 146, 358
FaiI YATR 2 cut(s) 144, 356
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 142, 354
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 6
HaeIII GGCC 3 cut(s) 259, 353, 371
HapII CCGG 2 cut(s) 88, 272
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 146, 358
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 126
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 2 cut(s) 88, 272
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 4 cut(s) 104, 133, 207, 412
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 277, 340
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 200, 245, 265
HpyF3I CTNAG 2 cut(s) 206, 377
Hsp92II CATG 2 cut(s) 146, 358
HspAI GCGC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 295
KspAI GTTAAC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 101, 157, 238, 265, 285
Lsp1109I GCAGC 5 cut(s) 53, 56, 184, 187, 260
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 3 cut(s) 18, 83, 221
MbiI CCGCTC 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 1 cut(s) 229
MluNI TGGCCA 1 cut(s) 371
MnlI CCTC 7 cut(s) 150, 249, 270, 271, 279, 336, 343
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 2 cut(s) 88, 272
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 44, 200, 245, 265
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 2 cut(s) 146, 358
NlaIV GGNNCC 2 cut(s) 296, 297
NmuCI GTSAC 1 cut(s) 18
PceI AGGCCT 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 296, 297
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
SaqAI TTAA 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 253
SetI ASST 3 cut(s) 31, 130, 212
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 295
Sse9I AATT 1 cut(s) 229
SseBI AGGCCT 1 cut(s) 259
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 178
TasI AATT 1 cut(s) 229
TauI GCSGC 6 cut(s) 41, 65, 149, 197, 248, 268
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 5 cut(s) 41, 44, 197, 200, 248
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 229
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.