AT1G24020

mlp-like protein 423

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013005
Physical Location & Seq
Reverse (-)
8500119 .. 8502065
1947 bp
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UTR
Exon/CDS
Intron
AT1G24020.1

Sequence Viewer

Length: 468 bp
ATGGGGTTGAGTGGTGTTCTTCATGTGGAGGTTGAGGTTAAGTCTCCGGCTGAAAAGTTCTGGGTAGCCCTTGGCGACGGCATCAATCTCTTCCCCAAAGCTTTCCCTAACGACTACAAAACCATCCAAGTTCTAGCCGGCGATGGCAACGCTCCTGGCTCCATTCGCCTCATTACTTATGGAGAAGGATCTCCACTGGTGAAGATATCGGCGGAGAGGATCGAAGCAGTGGATTTGGAGAACAAAAGCATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAACCTTCAAAGGAACCATCACCGTTATCCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCTGGTGAGTTTGAGAAGACCGCCCATGAGATCGATGATCCACATGTCATCAAGGACTTTGCTGTCAAGAACTTCAAAGAGATAGATGAGTATCTTCTTAAGCAAACTAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

17.05

Weight (kDa)

5.09

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 151 9e-33 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 8 - 123 4.4e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24020 AT1G24020
fragaria_vesca FvH4_4g34890
malus_domestica MD13G1088200.v1.1 MD16G1088600.v1.1
prunus_persica Prupe.1G258100_v2.0.a1
pyrus_communis pycom13g07600 pycom16g07580
rosa_chinensis RchiOBHm_Chr4g0444321
rosa_laevigata RLG00000005841
rosa_multiflora Rmu_sc0002841.1_g000013
rosa_roxburghii Rroxscaffold_5G00384870
rosa_rugosa Rorug04G0351500
rosa_samantha Rh4AG412200 Rh4BG423700 Rh4CG437900 Rh4DG419000
rosa_wichuraiana Rw4G035410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AciI CCGC 3 cut(s) 212, 270, 372
AclWI GGATC 3 cut(s) 196, 227, 383
AfaI GTAC 2 cut(s) 257, 287
AfiI CCNNNNNNNGG 1 cut(s) 329
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 2 cut(s) 301, 427
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 3 cut(s) 196, 227, 383
AsuHPI GGTGA 3 cut(s) 211, 304, 368
AxyI CCTNAGG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 374
BccI CCATC 4 cut(s) 131, 137, 317, 323
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 48
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 2 cut(s) 134, 459
BfrI CTTAAG 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 160, 307
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 90, 270
BpiI GAAGAC 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 201
Bse21I CCTNAGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 123, 334
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 384
BsiSI CCGG 2 cut(s) 47, 138
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 188, 219, 381, 388
BspACI CCGC 3 cut(s) 212, 270, 372
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 160, 307
BspPI GGATC 3 cut(s) 196, 227, 383
BspTI CTTAAG 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 4 cut(s) 188, 219, 381, 388
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 95
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 123, 334
BstKTI GATC 4 cut(s) 191, 222, 384, 391
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 4 cut(s) 188, 219, 381, 388
BstMWI GCNNNNNNNGC 2 cut(s) 165, 267
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 253, 398
BstSCI CCNGG 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 123, 334
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 194, 234
Cac8I GCNNGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 2 cut(s) 256, 286
CviAII CATG 4 cut(s) 23, 250, 377, 395
CviJI RGCY 6 cut(s) 50, 68, 101, 137, 159, 339
CviKI_1 RGCY 6 cut(s) 50, 68, 101, 137, 159, 339
CviQI GTAC 2 cut(s) 256, 286
DdeI CTNAG 1 cut(s) 324
DpnI GATC 4 cut(s) 190, 221, 383, 390
DpnII GATC 4 cut(s) 188, 219, 381, 388
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 2 cut(s) 227, 285
Eco130I CCWWGG 1 cut(s) 70
Eco32I GATATC 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 26, 253, 380, 398
FaiI YATR 5 cut(s) 24, 180, 251, 378, 396
FatI CATG 4 cut(s) 22, 249, 376, 394
FokI GGATG 2 cut(s) 110, 341
FspBI CTAG 2 cut(s) 134, 459
HapII CCGG 2 cut(s) 47, 138
Hin1II CATG 4 cut(s) 26, 253, 380, 398
HindIII AAGCTT 1 cut(s) 99
HpaII CCGG 2 cut(s) 47, 138
HphI GGTGA 3 cut(s) 211, 304, 368
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 179, 307, 350
HpyCH4III ACNGT 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 267
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 4 cut(s) 26, 253, 380, 398
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 4 cut(s) 188, 219, 381, 388
LmnI GCTCC 2 cut(s) 157, 164
LpnPI CCDG 7 cut(s) 46, 60, 141, 151, 168, 182, 339
LweI GCATC 2 cut(s) 90, 270
MaeI CTAG 2 cut(s) 134, 459
MalI GATC 4 cut(s) 190, 221, 383, 390
MboI GATC 4 cut(s) 188, 219, 381, 388
MboII GAAGA 5 cut(s) 11, 82, 214, 379, 437
MflI RGATCY 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 22, 28, 179, 210
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 2 cut(s) 39, 450
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 2 cut(s) 47, 138
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 165, 267
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 4 cut(s) 188, 219, 381, 388
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 26, 253, 380, 398
NlaIV GGNNCC 2 cut(s) 160, 307
NspI RCATGY 2 cut(s) 253, 398
PciI ACATGT 1 cut(s) 394
PdiI GCCGGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 160, 307
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 2 cut(s) 257, 287
RsaNI GTAC 2 cut(s) 256, 286
SaqAI TTAA 2 cut(s) 39, 450
Sau3AI GATC 4 cut(s) 188, 219, 381, 388
ScaI AGTACT 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 156
SetI ASST 4 cut(s) 33, 39, 103, 299
SfaNI GCATC 2 cut(s) 90, 270
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SpeI ACTAGT 1 cut(s) 458
SsiI CCGC 3 cut(s) 212, 270, 372
SspMI CTAG 2 cut(s) 134, 459
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 222, 384
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 2 cut(s) 39, 450
Tru9I TTAA 2 cut(s) 39, 450
TscAI CASTG 2 cut(s) 201, 234
TspDTI ATGAA 1 cut(s) 11
TspRI CASTG 2 cut(s) 201, 234
Vha464I CTTAAG 1 cut(s) 449
XceI RCATGY 2 cut(s) 253, 398
XspI CTAG 2 cut(s) 134, 459
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.