Rroxscaffold_5G00384870

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013005
Physical Location & Seq
Reverse (-)
64091595 .. 64092485
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384870.1

Sequence Viewer

Length: 357 bp
ATGGCTTCAGACGTTGGAAAGCTTCACGTGGAAGTCGAGGTGAAATCTCCGGCGGAGAAGTTCTGGGTAAGCCTCAGGGACTCGACCGAAGTCTTTCCCAAGGCTTTCCCTCATGACTACAAGAGCATCGATGTCCTCGAAGGCGATGGCAAGGCTGTTGGATCCGTTCGCCTCATAACATACTCTGAAGGTTCTCCGATTGTGAAGGTGTCGAAGGAAACGATCGACATGGTTGATGAAGCTAACAAGGCGGTGGCCTACCGGGTGATCGACGGTGATCTGCTCAAGTACTACCAGAGCTTCAAGTGCATCCTGACCGTGATTTCCAAGGGAGCTGAAGGAGGGGGAGCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

118

Amino Acids

12.91

Weight (kDa)

5.36

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 113 3.6e-29 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24020 AT1G24020
fragaria_vesca FvH4_4g34890
malus_domestica MD13G1088200.v1.1 MD16G1088600.v1.1
prunus_persica Prupe.1G258100_v2.0.a1
pyrus_communis pycom13g07600 pycom16g07580
rosa_chinensis RchiOBHm_Chr4g0444321
rosa_laevigata RLG00000005841
rosa_multiflora Rmu_sc0002841.1_g000013
rosa_roxburghii Rroxscaffold_5G00384870
rosa_rugosa Rorug04G0351500
rosa_samantha Rh4AG412200 Rh4BG423700 Rh4CG437900 Rh4DG419000
rosa_wichuraiana Rw4G035410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 251
AclWI GGATC 2 cut(s) 156, 169
AcuI CTGAAG 2 cut(s) 207, 357
AcvI CACGTG 1 cut(s) 28
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 5 cut(s) 22, 242, 300, 335, 350
AluI AGCT 5 cut(s) 22, 242, 300, 335, 350
AlwI GGATC 2 cut(s) 156, 169
AoxI GGCC 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 52, 277, 287
AxyI CCTNAGG 1 cut(s) 74
BamHI GGATCC 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 28
BccI CCATC 1 cut(s) 140
BcnI CCSGG 1 cut(s) 263
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 135, 318
BoxI GACNNNNGTC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 99, 327
Bse21I CCTNAGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 99, 327
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 88
Bsh1285I CGRYCG 2 cut(s) 87, 225
BshFI GGCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 2 cut(s) 87, 225
BsiSI CCGG 2 cut(s) 50, 262
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 161, 222, 267, 277
BspACI CCGC 2 cut(s) 53, 251
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 129
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 2 cut(s) 156, 169
BssECI CCNNGG 2 cut(s) 99, 327
BssMI GATC 4 cut(s) 161, 222, 267, 277
BssT1I CCWWGG 2 cut(s) 99, 327
Bst4CI ACNGT 2 cut(s) 275, 319
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 164, 225, 270, 280
BstMBI GATC 4 cut(s) 161, 222, 267, 277
BstMCI CGRYCG 2 cut(s) 87, 225
BstMWI GCNNNNNNNGC 2 cut(s) 248, 306
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
Bsu15I ATCGAT 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 74
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 309
CciI TCATGA 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 113, 229
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 74
DpnI GATC 4 cut(s) 163, 224, 269, 279
DpnII GATC 4 cut(s) 161, 222, 267, 277
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 99, 327
Eco57I CTGAAG 2 cut(s) 207, 357
Eco72I CACGTG 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 99, 327
ErhI CCWWGG 2 cut(s) 99, 327
FaeI CATG 2 cut(s) 116, 232
FaiI YATR 4 cut(s) 114, 176, 181, 230
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 112, 228
FokI GGATG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 50, 262
Hin1II CATG 2 cut(s) 116, 232
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 80
HpaII CCGG 2 cut(s) 50, 262
HphI GGTGA 3 cut(s) 52, 277, 287
Hpy188I TCNGA 3 cut(s) 10, 187, 198
Hpy188III TCNNGA 2 cut(s) 113, 313
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 5 cut(s) 134, 182, 199, 208, 332
HpyCH4III ACNGT 2 cut(s) 275, 319
HpyCH4IV ACGT 2 cut(s) 12, 27
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 306
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 12, 27
Hsp92II CATG 2 cut(s) 116, 232
Kzo9I GATC 4 cut(s) 161, 222, 267, 277
LmnI GCTCC 2 cut(s) 332, 347
LpnPI CCDG 6 cut(s) 49, 61, 63, 275, 308, 326
LweI GCATC 2 cut(s) 135, 318
MaeII ACGT 2 cut(s) 12, 27
MalI GATC 4 cut(s) 163, 224, 269, 279
MboI GATC 4 cut(s) 161, 222, 267, 277
MflI RGATCY 1 cut(s) 161
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 6 cut(s) 31, 83, 120, 146, 182, 335
MroXI GAANNNNTTC 1 cut(s) 93
MspI CCGG 2 cut(s) 50, 262
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 248, 306
NciI CCSGG 1 cut(s) 263
NdeII GATC 4 cut(s) 161, 222, 267, 277
NlaIII CATG 2 cut(s) 116, 232
NlaIV GGNNCC 1 cut(s) 163
PagI TCATGA 1 cut(s) 112
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 135, 218
PdmI GAANNNNTTC 1 cut(s) 93
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 1 cut(s) 74
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
PpsI GAGTC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 89
PspCI CACGTG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 161
PvuI CGATCG 1 cut(s) 225
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
Sau3AI GATC 4 cut(s) 161, 222, 267, 277
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 263
SfaNI GCATC 2 cut(s) 135, 318
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SsiI CCGC 2 cut(s) 53, 251
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 99, 327
TaaI ACNGT 2 cut(s) 275, 319
TaiI ACGT 2 cut(s) 15, 30
TaqI TCGA 7 cut(s) 36, 83, 129, 138, 212, 225, 270
TaqII GACCGA 1 cut(s) 101
TatI WGTACW 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.