FvH4_4g34890

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013005
Physical Location & Seq
Reverse (-)
32426904 .. 32428107
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34890.t1

Sequence Viewer

Length: 474 bp
ATGGCGCCTTCAGATGTTGGAAAGCTTCATGTGGAAGTCGAAGTGAAATCTCCGGCGGACAAGTTCTGGGTAAGCATCAGGGACTCGACCGAAGTCTTCCCCAAGGCTTTCCCTCATGACTACAAGAGCATCGATGTCCTTGAAGGCGATGGCAAGGCTGTTGGATCCGTTCGCCTCATAACATACTCTGAAGGTTCTCCGATTGTGAAGGTGTCGAAGGAGACGATCGACATGGTGGATGAAACAAACAAGGCGGTGGCGTACCAGGTGATCGACGGTGATCTGCTCAAGTACTACAAGAGCTTCAAGTGCATCCTGACTGTGATTCCCAAGGGAGCTGAGGGAGAGGGGAGCTTGGTCAAGTGGTCGTGTGAGTATGAGAAAGCTCACGAGCAGGTTCCTGAGCCAAGCATCATTAAGGACTTTGCTGTCAAGAACTTCAAAGAGCTCGATGACTATGTCCTCGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

5.12

Isoelectric Point (pI)

20.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 6 - 157 5.8e-43 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24020 AT1G24020
fragaria_vesca FvH4_4g34890
malus_domestica MD13G1088200.v1.1 MD16G1088600.v1.1
prunus_persica Prupe.1G258100_v2.0.a1
pyrus_communis pycom13g07600 pycom16g07580
rosa_chinensis RchiOBHm_Chr4g0444321
rosa_laevigata RLG00000005841
rosa_multiflora Rmu_sc0002841.1_g000013
rosa_roxburghii Rroxscaffold_5G00384870
rosa_rugosa Rorug04G0351500
rosa_samantha Rh4AG412200 Rh4BG423700 Rh4CG437900 Rh4DG419000
rosa_wichuraiana Rw4G035410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 56, 254
AclWI GGATC 2 cut(s) 159, 172
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 263, 293
AgsI TTSAA 3 cut(s) 143, 307, 442
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 6 cut(s) 25, 303, 338, 354, 386, 448
AluI AGCT 6 cut(s) 25, 303, 338, 354, 386, 448
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 159, 172
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 280, 290
BamHI GGATCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 450
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 6, 166, 399
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 4 cut(s) 84, 138, 321, 420
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 88
Bpu10I CCTNAGC 2 cut(s) 339, 402
BpuEI CTTGAG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 102, 330
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 102, 330
BseGI GGATG 2 cut(s) 244, 312
BseMII CTCAG 2 cut(s) 330, 393
Bsh1285I CGRYCG 2 cut(s) 90, 228
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 2 cut(s) 90, 228
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 164, 225, 270, 280
BspACI CCGC 2 cut(s) 56, 254
BspCNI CTCAG 2 cut(s) 331, 394
BspDI ATCGAT 1 cut(s) 132
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 6, 166, 399
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 159, 172
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 102, 330
BssMI GATC 4 cut(s) 164, 225, 270, 280
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 102, 330
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 278, 322
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 339, 402
BstF5I GGATG 2 cut(s) 244, 312
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 167, 228, 273, 283
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 164, 225, 270, 280
BstMCI CGRYCG 2 cut(s) 90, 228
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 266
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 244, 312
BveI ACCTGC 1 cut(s) 385
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 2 cut(s) 262, 292
CviAII CATG 3 cut(s) 29, 116, 232
CviJI RGCY 9 cut(s) 25, 107, 158, 303, 338, 354, 386, 406, 448
CviKI_1 RGCY 9 cut(s) 25, 107, 158, 303, 338, 354, 386, 406, 448
CviQI GTAC 2 cut(s) 262, 292
DdeI CTNAG 2 cut(s) 339, 402
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 166, 227, 272, 282
DpnII GATC 4 cut(s) 164, 225, 270, 280
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 102, 330
Eco24I GRGCYC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 102, 330
EcoT38I GRGCYC 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 102, 330
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 3 cut(s) 32, 119, 235
FaiI YATR 7 cut(s) 30, 117, 179, 184, 233, 378, 459
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 28, 115, 231
FokI GGATG 2 cut(s) 251, 299
FriOI GRGCYC 1 cut(s) 450
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 32, 119, 235
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 83, 325
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 280, 290
Hpy188I TCNGA 3 cut(s) 13, 190, 201
Hpy188III TCNNGA 5 cut(s) 116, 316, 389, 401, 433
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 5 cut(s) 18, 137, 185, 202, 211
HpyCH4III ACNGT 2 cut(s) 278, 322
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 2 cut(s) 339, 402
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 32, 119, 235
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 164, 225, 270, 280
LmnI GCTCC 2 cut(s) 335, 351
LpnPI CCDG 8 cut(s) 52, 64, 66, 251, 278, 329, 380, 414
LweI GCATC 4 cut(s) 84, 138, 321, 420
MabI ACCWGGT 1 cut(s) 264
MalI GATC 4 cut(s) 166, 227, 272, 282
MboI GATC 4 cut(s) 164, 225, 270, 280
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 450
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 5 cut(s) 123, 185, 334, 340, 473
MseI TTAA 1 cut(s) 417
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 164, 225, 270, 280
NlaIII CATG 3 cut(s) 32, 119, 235
NlaIV GGNNCC 3 cut(s) 6, 166, 399
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 325
PflFI GACNNNGTC 1 cut(s) 458
Ple19I CGATCG 1 cut(s) 228
PleI GAGTC 1 cut(s) 77
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 77
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 6, 166, 399
PsuI RGATCY 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 458
PvuI CGATCG 1 cut(s) 228
RsaI GTAC 2 cut(s) 263, 293
RsaNI GTAC 2 cut(s) 262, 292
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 4 cut(s) 164, 225, 270, 280
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 450
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 4 cut(s) 84, 138, 321, 420
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SsiI CCGC 2 cut(s) 56, 254
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 102, 330
TaaI ACNGT 2 cut(s) 278, 322
TaqI TCGA 7 cut(s) 39, 86, 132, 215, 228, 273, 450
TaqII GACCGA 1 cut(s) 104
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 17, 255
TspGWI ACGGA 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.