Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

52351078 .. 52356735

Gene Structure 5658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0351500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAGTTGTGTAAGAGACGTATGTTGTCTGTTGTTGCTGCTTTGGTTCTTGGGCTGTGTTTGGATCTGAGCTTGGTTTGTGCATCTGGGGAGGCTCATGTTCACACCCACCACTGTAATCACGGCCATGATGACCATGACCATCATGGCCATGGTCACCAAGGCCAGAGCTTGGTGGGGTCGAAGCTTCTTCCGGAGGAATTGGCGGAGGAGGAGGATATGAAGTTGTATGGATTTGGGTTTCAACATGACCATGAGCATTTTGGTGCTTTGCAGCTCTCGGTGACTGGTCTTTGGATTCATTCATTGGGATGCTCGTTTTTGGTCAGCATGGCTTCCCTCATTTGCCTGATTATCTTGCCAGTAATATTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGGCACTCACATGACGACCCTGTAGGCCATGATCATCACGATCATAGTGAACATGAGCATTCACATGCGCATTCTTTGGAAGATCTTTCTGTAGGAATTGCTGTCCTGGCGGGAATTGTATTATTTCTTTTGGTAGAAAAGATGGTGAGGTATGTGGAGGAACACTCTGGAGGAACTAATGCATTGGGTCATGGTCATCATCACCATCATCACAGCAAGAAATTGAAGGATGACAACGATTCTCATGATGACTTGACATCAGAATCTTCCGCTGGAAAAGATGGAAGGAAGCCAAATGTGTCATCTGAAGGAAAAGTGGAAAGTGAAGTTTTAAATGATTCTTTGAAGGAAAATTCTCATCATGATTCTCAATTGCGTAAGAGAAACACTGCCACAGGTGATAGGGATAATAAACAAGATGTTCATGCTGCAGATGACTCGAGTCATGATGCTAAATCGTTAGATGTAGAACCTACACGATCACCCAACAAACTTGTGTTTGGTTATCTCAATCTCTTCTCTGACGGTGTTCACAATTTCACAGATGGGATGGCTTTAGGAAGTGCTTTCCTGCTTCATGGTACTGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCGCATGAGATTCCTCAAGAGGTTGGTGATTTTGGTATTCTGGTGAGGTCTGGTTTCAGTGTATCTAAAGCTCTCTTTTTCAATTTCCTCTCAGCACTTGTGGCCCTCGTTGGAACTGCAACGGCTCTGCTTGTCGGACAAGATCCGGGACAGTCATCTTTGATGGAGGGTTTTACAGCTGGTGGATTTATATACATTGCGGTTGCTGGAGTGCTTGCAGAAATGAATAGCAATGGCAACTCATCATTGAAAAGCACAGCGATGCAATTAACTTCGTTGATACTCGGCATGTCAGTTGCTCTATGTATTTCACTTTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

473

Amino Acids

50.79

Weight (kDa)

5.78

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	97 - 469	9e-55	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	549, 1101
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	206, 590, 750, 1298
AclWI	GGATC	2 cut(s)	72, 1235
AcoI	YGGCCR	2 cut(s)	124, 148
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	2 cut(s)	375, 1063
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	245, 706, 826, 1180, 1348
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	7 cut(s)	72, 171, 187, 277, 431, 1169, 1277
AluI	AGCT	7 cut(s)	72, 171, 187, 277, 431, 1169, 1277
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	72, 1235
Ama87I	CYCGRG	1 cut(s)	919
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	5 cut(s)	124, 148, 163, 505, 1200
ApeKI	GCWGC	3 cut(s)	38, 274, 908
ApoI	RAATTY	1 cut(s)	832
AspLEI	GCGC	2 cut(s)	550, 1102
AspS9I	GGNCC	1 cut(s)	1201
AsuC2I	CCSGG	1 cut(s)	1245
AsuHPI	GGTGA	8 cut(s)	149, 295, 637, 674, 890, 954, 1136, 1153
AvaI	CYCGRG	1 cut(s)	919
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	25, 286, 895
BccI	CCATC	8 cut(s)	150, 394, 616, 693, 755, 1019, 1024, 1255
BceAI	ACGGC	2 cut(s)	139, 1236
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	1245
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	1080
BfmI	CTRYAG	3 cut(s)	501, 570, 909
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	3 cut(s)	39, 275, 909
BlsI	GCNGC	3 cut(s)	40, 276, 910
Bme1390I	CCNGG	2 cut(s)	587, 1245
BmeT110I	CYCGRG	1 cut(s)	919
BmgT120I	GGNCC	1 cut(s)	1201
BmrFI	CCNGG	2 cut(s)	587, 1245
BmsI	GCATC	5 cut(s)	92, 302, 433, 919, 1350
BoxI	GACNNNNGTC	1 cut(s)	921
BplI	GAGNNNNNCTC	2 cut(s)	629, 661
BpmI	CTGGAG	3 cut(s)	447, 669, 1326
BpuEI	CTTGAG	1 cut(s)	1098
BpuMI	CCSGG	1 cut(s)	1245
BsaJI	CCNNGG	3 cut(s)	151, 160, 390
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	292, 362
Bse3DI	GCAATG	2 cut(s)	1293, 1336
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	151, 160, 390
BseGI	GGATG	5 cut(s)	317, 386, 448, 715, 1035
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	1293, 1336
BseMII	CTCAG	2 cut(s)	59, 1203
BseNI	ACTGG	2 cut(s)	292, 362
BseRI	GAGGAG	2 cut(s)	224, 227
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	25, 286, 895
BshFI	GGCC	5 cut(s)	126, 150, 165, 507, 1202
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	194, 1244
BslFI	GGGAC	1 cut(s)	1260
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	1260
BsmI	GAATGC	2 cut(s)	538, 550
BsnI	GGCC	5 cut(s)	126, 150, 165, 507, 1202
BsoBI	CYCGRG	1 cut(s)	919
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	4 cut(s)	206, 590, 750, 1298
BspANI	GGCC	5 cut(s)	126, 150, 165, 507, 1202
BspCNI	CTCAG	2 cut(s)	60, 1202
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	3 cut(s)	724, 841, 925
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	2 cut(s)	72, 1235
BsrDI	GCAATG	2 cut(s)	1293, 1336
BsrI	ACTGG	2 cut(s)	292, 362
BssECI	CCNNGG	3 cut(s)	151, 160, 390
BssMI	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
BssT1I	CCWWGG	3 cut(s)	151, 160, 390
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	4 cut(s)	116, 1007, 1066, 1251
Bst6I	CTCTTC	1 cut(s)	1001
BstC8I	GCNNGC	2 cut(s)	1098, 1314
BstDEI	CTNAG	2 cut(s)	68, 1189
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	317, 386, 448, 715, 1035
BstHHI	GCGC	2 cut(s)	550, 1102
BstKTI	GATC	6 cut(s)	67, 514, 523, 565, 962, 1243
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
BstMWI	GCNNNNNNNGC	2 cut(s)	587, 1199
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	3 cut(s)	470, 548, 1390
BstPAI	GACNNNNGTC	1 cut(s)	921
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	585, 1243
BstSFI	CTRYAG	3 cut(s)	501, 570, 909
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	25, 286, 895
BstX2I	RGATCY	3 cut(s)	64, 562, 1240
BstYI	RGATCY	3 cut(s)	64, 562, 1240
BsuRI	GGCC	5 cut(s)	126, 150, 165, 507, 1202
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	1373
BtsCI	GGATG	5 cut(s)	317, 386, 448, 715, 1035
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	3 cut(s)	112, 867, 1162
Cac8I	GCNNGC	2 cut(s)	1098, 1314
CciI	TCATGA	3 cut(s)	724, 841, 925
CfoI	GCGC	2 cut(s)	550, 1102
Cfr13I	GGNCC	1 cut(s)	1201
Csp6I	GTAC	2 cut(s)	374, 1062
CviQI	GTAC	2 cut(s)	374, 1062
DdeI	CTNAG	2 cut(s)	68, 1189
DpnI	GATC	6 cut(s)	66, 513, 522, 564, 961, 1242
DpnII	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
DraI	TTTAAA	1 cut(s)	813
EaeI	YGGCCR	2 cut(s)	124, 148
Eam1104I	CTCTTC	1 cut(s)	1001
EarI	CTCTTC	1 cut(s)	1001
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	3 cut(s)	151, 160, 390
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	3 cut(s)	151, 160, 390
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	3 cut(s)	151, 160, 390
Esp3I	CGTCTC	1 cut(s)	10
FaqI	GGGAC	1 cut(s)	1260
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	39, 275, 909
FokI	GGATG	5 cut(s)	324, 373, 455, 722, 1042
Fsp4HI	GCNGC	3 cut(s)	39, 275, 909
FspAI	RTGCGCAY	1 cut(s)	549
FspBI	CTAG	1 cut(s)	1080
FspI	TGCGCA	2 cut(s)	549, 1101
GlaI	GCGC	2 cut(s)	549, 1101
GluI	GCNGC	3 cut(s)	39, 275, 909
GsuI	CTGGAG	3 cut(s)	447, 669, 1326
HaeIII	GGCC	5 cut(s)	126, 150, 165, 507, 1202
HapII	CCGG	2 cut(s)	194, 1244
HhaI	GCGC	2 cut(s)	550, 1102
Hin6I	GCGC	2 cut(s)	548, 1100
HinP1I	GCGC	2 cut(s)	548, 1100
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	9 cut(s)	298, 404, 719, 743, 818, 845, 917, 922, 1108
HpaII	CCGG	2 cut(s)	194, 1244
HphI	GGTGA	8 cut(s)	149, 295, 637, 674, 890, 954, 1136, 1153
Hpy166II	GTNNAC	3 cut(s)	103, 530, 1012
Hpy188I	TCNGA	5 cut(s)	69, 742, 787, 1003, 1235
Hpy188III	TCNNGA	8 cut(s)	194, 518, 648, 725, 842, 926, 1080, 1115
Hpy8I	GTNNAC	3 cut(s)	103, 530, 1012
HpyAV	CCTTC	5 cut(s)	461, 700, 759, 782, 820
HpyCH4III	ACNGT	4 cut(s)	116, 1007, 1066, 1251
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	7 cut(s)	83, 274, 662, 911, 1217, 1316, 1363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	587, 1199
HpyF3I	CTNAG	2 cut(s)	68, 1189
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	2 cut(s)	548, 1100
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	3 cut(s)	25, 286, 895
LweI	GCATC	5 cut(s)	92, 302, 433, 919, 1350
MaeI	CTAG	1 cut(s)	1080
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	155, 283
MalI	GATC	6 cut(s)	66, 513, 522, 564, 961, 1242
MboI	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
MboII	GAAGA	4 cut(s)	182, 572, 738, 988
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	3 cut(s)	64, 562, 1240
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	911, 931
MmeI	TCCRAC	2 cut(s)	1189, 1213
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	812, 1367
MslI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 543, 1358
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	752, 1277
MspI	CCGG	2 cut(s)	194, 1244
MspR9I	CCNGG	2 cut(s)	587, 1245
MunI	CAATTG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	538, 550
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	587, 1199
NciI	CCSGG	1 cut(s)	1245
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
NmeAIII	GCCGAG	1 cut(s)	1362
NmuCI	GTSAC	2 cut(s)	155, 283
NsbI	TGCGCA	2 cut(s)	549, 1101
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	3 cut(s)	470, 548, 1390
PaeR7I	CTCGAG	1 cut(s)	919
PagI	TCATGA	3 cut(s)	724, 841, 925
PctI	GAATGC	2 cut(s)	538, 550
PfeI	GAWTC	7 cut(s)	298, 404, 719, 743, 818, 845, 1108
PflMI	CCANNNNNTGG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	1243
PkrI	GCNGC	3 cut(s)	40, 276, 910
PleI	GAGTC	2 cut(s)	911, 930
PpsI	GAGTC	2 cut(s)	911, 930
PshAI	GACNNNNGTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	1201
PspXI	VCTCGAGB	1 cut(s)	919
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	3 cut(s)	64, 562, 1240
PvuII	CAGCTG	1 cut(s)	1277
RsaI	GTAC	2 cut(s)	375, 1063
RsaNI	GTAC	2 cut(s)	374, 1062
RseI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 543, 1358
SaqAI	TTAA	2 cut(s)	812, 1367
SatI	GCNGC	3 cut(s)	39, 275, 909
Sau3AI	GATC	6 cut(s)	64, 511, 520, 562, 959, 1240
Sau96I	GGNCC	1 cut(s)	1201
SchI	GAGTC	2 cut(s)	911, 931
ScrFI	CCNGG	2 cut(s)	587, 1245
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	5 cut(s)	92, 302, 433, 919, 1350
SfcI	CTRYAG	3 cut(s)	501, 570, 909
Sfr274I	CTCGAG	1 cut(s)	919
SlaI	CTCGAG	1 cut(s)	919
SmiMI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 543, 1358
SmlI	CTYRAG	2 cut(s)	919, 1113
SmoI	CTYRAG	2 cut(s)	919, 1113
SsiI	CCGC	4 cut(s)	206, 590, 750, 1298
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	1080
StyD4I	CCNGG	2 cut(s)	585, 1243
StyI	CCWWGG	3 cut(s)	151, 160, 390
TaaI	ACNGT	4 cut(s)	116, 1007, 1066, 1251
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	182, 920
TfiI	GAWTC	7 cut(s)	298, 404, 719, 743, 818, 845, 1108
Tru1I	TTAA	2 cut(s)	812, 1367
Tru9I	TTAA	2 cut(s)	812, 1367
TscAI	CASTG	3 cut(s)	119, 874, 1162
TseFI	GTSAC	2 cut(s)	155, 283
TseI	GCWGC	3 cut(s)	38, 274, 908
Tsp45I	GTSAC	2 cut(s)	155, 283
TspDTI	ATGAA	7 cut(s)	236, 290, 294, 443, 893, 1046, 1337
TspRI	CASTG	3 cut(s)	119, 874, 1162
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	832
XbaI	TCTAGA	1 cut(s)	1079
XceI	RCATGY	3 cut(s)	470, 548, 1390
XcmI	CCANNNNNNNNNTGG	3 cut(s)	143, 149, 260
XhoI	CTCGAG	1 cut(s)	919
XspI	CTAG	1 cut(s)	1080
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.