Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

67595949 .. 67598807

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG437800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTGCCGTTTTCGGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCTCCATGACAGAATATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGATCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAAAAGTACAAGTGCTACACAACAACCACTCTTCTCCTTCGGTCTCTTTGTTCGATGCTTCCTCTTGGGTTTAACAGGGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCATCCTCAGGAGGACAAAGACAGATTGGAGAAGCTCAAGCTTCCAAGCCAAAGTAGTTGGCACTATAATATCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATACATAAGACCATCTTCAGTTTTGTCCTCGTCTTCATACTCGGTCTTATTTCAGAAAGCAGGACAATATTTGGTCTTCTCCTCACCAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGACATCAATTTTTGTACTGAATAAAGAGTATGGCTGCAGTGTGTTAGGAGCAGTGGTGACCGGAGTAGGGTACTTTACTATAATGTGGGGGCAGATCAAAGAAGATGAAGATGAACAATGTGTTAATCATAATGATCAGAGCCATCTGGAATCTACAAATTCTGAAGCCAAGGTCCCTCTCTTGGAAGAAGAAATCGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

277

Amino Acids

30.44

Weight (kDa)

5.71

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	579, 787
AcuI	CTGAAG	2 cut(s)	465, 813
AfaI	GTAC	4 cut(s)	40, 175, 645, 701
AfiI	CCNNNNNNNGG	2 cut(s)	696, 811
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	449
AluBI	AGCT	3 cut(s)	251, 387, 393
AluI	AGCT	3 cut(s)	251, 387, 393
Alw26I	GTCTC	2 cut(s)	215, 613
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	2 cut(s)	579, 787
AspS9I	GGNCC	3 cut(s)	316, 461, 802
AsuHPI	GGTGA	3 cut(s)	28, 540, 697
AvaII	GGWCC	2 cut(s)	461, 802
AxyI	CCTNAGG	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	489, 532
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	3 cut(s)	13, 484, 780
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	215, 613
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	664
BfrI	CTTAAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	664
BlsI	GCNGC	1 cut(s)	665
Bme18I	GGWCC	2 cut(s)	461, 802
BmgT120I	GGNCC	3 cut(s)	316, 461, 802
BmiI	GGNNCC	3 cut(s)	462, 595, 804
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	489, 532
BpuEI	CTTGAG	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	312, 798
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	696, 811
Bse21I	CCTNAGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	312, 798
BseGI	GGATG	2 cut(s)	135, 354
BseLI	CCNNNNNNNGG	2 cut(s)	696, 811
BseMII	CTCAG	2 cut(s)	373, 624
BseRI	GAGGAG	2 cut(s)	131, 535
BseXI	GCAGC	1 cut(s)	650
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	696, 811
BsmAI	GTCTC	2 cut(s)	215, 613
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	132, 723, 763
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	372, 623
BspLI	GGNNCC	3 cut(s)	462, 595, 804
BspMAI	CTGCAG	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	312, 798
BssMI	GATC	3 cut(s)	132, 723, 763
BssT1I	CCWWGG	2 cut(s)	312, 798
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	359, 610
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	135, 354
BstKTI	GATC	3 cut(s)	135, 726, 766
BstMAI	GTCTC	2 cut(s)	215, 613
BstMBI	GATC	3 cut(s)	132, 723, 763
BstPI	GGTNACC	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	664
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	2 cut(s)	489, 532
Bsu36I	CCTNAGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	135, 354
BtsI	GCAGTG	3 cut(s)	163, 673, 687
BtsIMutI	CAGTG	3 cut(s)	163, 673, 687
Cfr13I	GGNCC	3 cut(s)	316, 461, 802
Csp6I	GTAC	4 cut(s)	39, 174, 644, 700
CviAII	CATG	5 cut(s)	73, 88, 119, 313, 430
CviQI	GTAC	4 cut(s)	39, 174, 644, 700
DdeI	CTNAG	2 cut(s)	359, 610
DpnI	GATC	3 cut(s)	134, 725, 765
DpnII	GATC	3 cut(s)	132, 723, 763
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	312, 798
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	461, 802
Eco57I	CTGAAG	2 cut(s)	465, 813
Eco81I	CCTNAGG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	312, 798
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	312, 798
FaeI	CATG	5 cut(s)	76, 91, 122, 316, 433
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	5 cut(s)	72, 87, 118, 312, 429
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	2 cut(s)	122, 341
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	664
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	664
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	690
Hin1II	CATG	5 cut(s)	76, 91, 122, 316, 433
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	779
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	3 cut(s)	28, 540, 697
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	519, 630, 768, 793
Hpy188III	TCNNGA	2 cut(s)	361, 776
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	26, 214, 349
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	168, 269, 666
HpyF3I	CTNAG	2 cut(s)	359, 610
Hsp92II	CATG	5 cut(s)	76, 91, 122, 316, 433
Ksp22I	TGATCA	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	132, 723, 763
LmnI	GCTCC	2 cut(s)	593, 677
LpnPI	CCDG	8 cut(s)	43, 228, 346, 510, 564, 576, 703, 761
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	284, 685
MalI	GATC	3 cut(s)	134, 725, 765
MboI	GATC	3 cut(s)	132, 723, 763
MboII	GAAGA	8 cut(s)	190, 471, 489, 532, 743, 749, 827, 830
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	5 cut(s)	42, 297, 579, 636, 787
MseI	TTAA	4 cut(s)	50, 239, 281, 753
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	1 cut(s)	690
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	132, 723, 763
NlaIII	CATG	5 cut(s)	76, 91, 122, 316, 433
NlaIV	GGNNCC	3 cut(s)	462, 595, 804
NmuCI	GTSAC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	802
Psp5II	RGGWCCY	1 cut(s)	802
PspEI	GGTNACC	1 cut(s)	685
PspN4I	GGNNCC	3 cut(s)	462, 595, 804
PspPI	GGNCC	3 cut(s)	316, 461, 802
PspPPI	RGGWCCY	1 cut(s)	802
PstI	CTGCAG	1 cut(s)	668
RsaI	GTAC	4 cut(s)	40, 175, 645, 701
RsaNI	GTAC	4 cut(s)	39, 174, 644, 700
SaqAI	TTAA	4 cut(s)	50, 239, 281, 753
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	3 cut(s)	132, 723, 763
Sau96I	GGNCC	3 cut(s)	316, 461, 802
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	37, 71, 253, 267, 331, 389, 395, 804
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	1 cut(s)	664
SinI	GGWCC	2 cut(s)	461, 802
SmlI	CTYRAG	2 cut(s)	280, 388
SmoI	CTYRAG	2 cut(s)	280, 388
Sse9I	AATT	5 cut(s)	42, 297, 579, 636, 787
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	302
StyI	CCWWGG	2 cut(s)	312, 798
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	131, 220
TaqII	GACCGA	2 cut(s)	197, 496
TasI	AATT	5 cut(s)	42, 297, 579, 636, 787
TatI	WGTACW	3 cut(s)	38, 173, 643
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	4 cut(s)	50, 239, 281, 753
Tru9I	TTAA	4 cut(s)	50, 239, 281, 753
TscAI	CASTG	3 cut(s)	170, 673, 687
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	489, 750, 756
TspRI	CASTG	3 cut(s)	170, 673, 687
Vha464I	CTTAAG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	461, 802
XapI	RAATTY	2 cut(s)	579, 787
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.