Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

56815497 .. 56818033

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG423600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGATGATGGGGATCATTATGAGAAGTGTTAAGCTTGTAGAAATGTTGCCGTTTTCAGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCTCCATGACAGAATATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGTTCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAGAAGTACAAGTGCTACACAACAATCACTCTTCTCCTTCGGTCTCTTTGTTCGATGCTTCCTCTTGGGTTTAACAGGGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCATCCTCAGGTTAGTTATTTCATTTCTGTCCTCAAATACTCCAATCTCTCATCTTTTTGATGACTTCATTTTTCATCTATACTATTATATAACCTATAGAACTGTAATTTTAAGGAGGACAAAGACAGATTGGAGAAGCTCAAGCTTCCAAGCCAAAGTAGTTGGCACTATAATATCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATACATAAGACCATCTTCAGTTTTGTCCTCGTCTTCATACTCGATCTTATTTCAGAAAGCAAGACAATATTTGGTCTTCTCCTCACCAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGATAGGAACTATGAAACTATATCCGGAAGTGGAAGTAATGGAAGTGGTATCATATTATAGCTTGCTTGGGACTATCCAATGTGTTATATTCTCTTTATTCATAGAAAGAAGCCTAAGTGCTTGGAAATTAAAGCTCAACATGGATCTCCTTCTCATTGTTTTAACAGCATGTTTTGGGGGTCTAGTTCGAAGCCGGGTTCACAACTGGTGCATAAACATGAAGGGGACACATTATGTGCCAATGTTCAAACCATTTGGCATTGTTTTCGCCACCATTTTCGGTGTCAGCTTATCGGCTAATAATCTTCATTATGGAAGTGTGTTAGGAGCAGTGGTGACCGGAGTAGGGTACTTTACTATAATGTGGGGGCAGATCAAAGAAGATGAAGGTGAACAATGTGTTAATCATAATGATCAGAGCCATATGGAATCTACAAATTCTGAAGCCAAGGTCCCTCTCTTGGAAGAAGAAATCGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

419

Amino Acids

46.93

Weight (kDa)

8.06

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	799
AclWI	GGATC	2 cut(s)	20, 927
AcsI	RAATTY	2 cut(s)	726, 1213
AcuI	CTGAAG	2 cut(s)	612, 1239
AfaI	GTAC	3 cut(s)	82, 217, 1127
AfiI	CCNNNNNNNGG	2 cut(s)	1122, 1237
AflII	CTTAAG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	596, 1024
AluBI	AGCT	7 cut(s)	34, 293, 534, 540, 837, 910, 1065
AluI	AGCT	7 cut(s)	34, 293, 534, 540, 837, 910, 1065
Alw26I	GTCTC	2 cut(s)	257, 760
AlwI	GGATC	2 cut(s)	20, 927
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	726, 1213
AspS9I	GGNCC	3 cut(s)	358, 608, 1228
AsuC2I	CCSGG	1 cut(s)	971
AsuHPI	GGTGA	3 cut(s)	687, 1123, 1178
AsuII	TTCGAA	1 cut(s)	964
AvaII	GGWCC	2 cut(s)	608, 1228
AxyI	CCTNAGG	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	636, 679
BccI	CCATC	2 cut(s)	55, 631
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	1024, 1058
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	971
BcoDI	GTCTC	2 cut(s)	257, 760
BfaI	CTAG	2 cut(s)	344, 959
BfmI	CTRYAG	2 cut(s)	208, 490
BfrI	CTTAAG	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	971
Bme18I	GGWCC	2 cut(s)	608, 1228
BmgT120I	GGNCC	3 cut(s)	358, 608, 1228
BmiI	GGNNCC	3 cut(s)	609, 742, 1230
BmrFI	CCNGG	1 cut(s)	971
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	636, 679
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	354, 1224
BsaWI	WCCGGW	2 cut(s)	799, 1115
BsaXI	ACNNNNNCTCC	2 cut(s)	1095, 1125
Bsc4I	CCNNNNNNNGG	2 cut(s)	1122, 1237
Bse1I	ACTGG	1 cut(s)	986
Bse21I	CCTNAGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	799
BseDI	CCNNGG	2 cut(s)	354, 1224
BseGI	GGATG	2 cut(s)	177, 396
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	1122, 1237
BseMII	CTCAG	2 cut(s)	415, 771
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	2 cut(s)	173, 682
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	800, 970, 1116
BslFI	GGGAC	3 cut(s)	859, 1015, 1214
BslI	CCNNNNNNNGG	2 cut(s)	1122, 1237
BsmAI	GTCTC	2 cut(s)	257, 760
BsmFI	GGGAC	3 cut(s)	859, 1015, 1214
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	799
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	12, 654, 919, 1149, 1189
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	414, 770
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	3 cut(s)	609, 742, 1230
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	2 cut(s)	20, 927
BspT104I	TTCGAA	1 cut(s)	964
BspTI	CTTAAG	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	354, 1224
BssMI	GATC	5 cut(s)	12, 654, 919, 1149, 1189
BssT1I	CCWWGG	2 cut(s)	354, 1224
Bst4CI	ACNGT	2 cut(s)	332, 499
Bst6I	CTCTTC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	3 cut(s)	401, 757, 890
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	1111
BstF5I	GGATG	2 cut(s)	177, 396
BstKTI	GATC	5 cut(s)	15, 657, 922, 1152, 1192
BstMAI	GTCTC	2 cut(s)	257, 760
BstMBI	GATC	5 cut(s)	12, 654, 919, 1149, 1189
BstNSI	RCATGY	1 cut(s)	948
BstPI	GGTNACC	1 cut(s)	1111
BstSCI	CCNGG	1 cut(s)	969
BstSFI	CTRYAG	2 cut(s)	208, 490
BstV2I	GAAGAC	2 cut(s)	636, 679
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	177, 396
BtsI	GCAGTG	2 cut(s)	205, 1113
BtsIMutI	CAGTG	3 cut(s)	63, 205, 1113
Cac8I	GCNNGC	1 cut(s)	839
Cfr13I	GGNCC	3 cut(s)	358, 608, 1228
Csp6I	GTAC	3 cut(s)	81, 216, 1126
CviAII	CATG	8 cut(s)	115, 130, 161, 355, 577, 916, 945, 994
CviQI	GTAC	3 cut(s)	81, 216, 1126
DdeI	CTNAG	3 cut(s)	401, 757, 890
DpnI	GATC	5 cut(s)	14, 656, 921, 1151, 1191
DpnII	GATC	5 cut(s)	12, 654, 919, 1149, 1189
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	354, 1224
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	608, 1228
Eco57I	CTGAAG	2 cut(s)	612, 1239
Eco81I	CCTNAGG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	1111
EcoO109I	RGGNCCY	1 cut(s)	1228
EcoO65I	GGTNACC	1 cut(s)	1111
EcoT14I	CCWWGG	2 cut(s)	354, 1224
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	2 cut(s)	354, 1224
FaeI	CATG	8 cut(s)	118, 133, 164, 358, 580, 919, 948, 997
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FaqI	GGGAC	3 cut(s)	859, 1015, 1214
FatI	CATG	8 cut(s)	114, 129, 160, 354, 576, 915, 944, 993
FauNDI	CATATG	1 cut(s)	1200
FbaI	TGATCA	1 cut(s)	1189
FokI	GGATG	2 cut(s)	164, 383
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	344, 959
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	800, 970, 1116
Hin1II	CATG	8 cut(s)	118, 133, 164, 358, 580, 919, 948, 997
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	32, 538
HinfI	GANTC	1 cut(s)	1205
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	3 cut(s)	800, 970, 1116
HphI	GGTGA	3 cut(s)	687, 1123, 1178
Hpy166II	GTNNAC	3 cut(s)	93, 976, 1169
Hpy188I	TCNGA	4 cut(s)	666, 777, 1194, 1219
Hpy188III	TCNNGA	1 cut(s)	800
Hpy8I	GTNNAC	3 cut(s)	93, 976, 1169
HpyAV	CCTTC	6 cut(s)	68, 256, 391, 935, 991, 1157
HpyCH4III	ACNGT	2 cut(s)	332, 499
HpyCH4V	TGCA	3 cut(s)	210, 311, 987
HpyF3I	CTNAG	3 cut(s)	401, 757, 890
Hsp92II	CATG	8 cut(s)	118, 133, 164, 358, 580, 919, 948, 997
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	1189
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	12, 654, 919, 1149, 1189
LmnI	GCTCC	2 cut(s)	740, 1103
LpnPI	CCDG	9 cut(s)	85, 270, 388, 711, 723, 813, 967, 983, 1129
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	344, 959
MaeIII	GTNAC	2 cut(s)	326, 1111
MalI	GATC	5 cut(s)	14, 656, 921, 1151, 1191
MboI	GATC	5 cut(s)	12, 654, 919, 1149, 1189
MboII	GAAGA	8 cut(s)	232, 618, 636, 679, 1073, 1169, 1253, 1256
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	84, 339, 501, 726, 902, 1213
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	8 cut(s)	30, 92, 281, 323, 506, 905, 938, 1179
MslI	CAYNNNNRTG	1 cut(s)	992
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	3 cut(s)	800, 970, 1116
MspR9I	CCNGG	1 cut(s)	971
NciI	CCSGG	1 cut(s)	971
NcoI	CCATGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	1200
NdeII	GATC	5 cut(s)	12, 654, 919, 1149, 1189
NlaIII	CATG	8 cut(s)	118, 133, 164, 358, 580, 919, 948, 997
NlaIV	GGNNCC	3 cut(s)	609, 742, 1230
NmuCI	GTSAC	1 cut(s)	1111
NspI	RCATGY	1 cut(s)	948
NspV	TTCGAA	1 cut(s)	964
PfeI	GAWTC	1 cut(s)	1205
PpuMI	RGGWCCY	1 cut(s)	1228
Psp5II	RGGWCCY	1 cut(s)	1228
PspEI	GGTNACC	1 cut(s)	1111
PspN4I	GGNNCC	3 cut(s)	609, 742, 1230
PspPI	GGNCC	3 cut(s)	358, 608, 1228
PspPPI	RGGWCCY	1 cut(s)	1228
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	919
RsaI	GTAC	3 cut(s)	82, 217, 1127
RsaNI	GTAC	3 cut(s)	81, 216, 1126
RseI	CAYNNNNRTG	1 cut(s)	992
SaqAI	TTAA	8 cut(s)	30, 92, 281, 323, 506, 905, 938, 1179
Sau3AI	GATC	5 cut(s)	12, 654, 919, 1149, 1189
Sau96I	GGNCC	3 cut(s)	358, 608, 1228
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	2 cut(s)	208, 490
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	2 cut(s)	608, 1228
SmiMI	CAYNNNNRTG	1 cut(s)	992
SmlI	CTYRAG	2 cut(s)	322, 535
SmoI	CTYRAG	2 cut(s)	322, 535
Sse9I	AATT	6 cut(s)	84, 339, 501, 726, 902, 1213
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	2 cut(s)	344, 959
StyD4I	CCNGG	1 cut(s)	969
StyI	CCWWGG	2 cut(s)	354, 1224
TaaI	ACNGT	2 cut(s)	332, 499
TaqI	TCGA	3 cut(s)	262, 653, 964
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	84, 339, 501, 726, 902, 1213
TatI	WGTACW	2 cut(s)	80, 215
TfiI	GAWTC	1 cut(s)	1205
Tru1I	TTAA	8 cut(s)	30, 92, 281, 323, 506, 905, 938, 1179
Tru9I	TTAA	8 cut(s)	30, 92, 281, 323, 506, 905, 938, 1179
TscAI	CASTG	3 cut(s)	63, 212, 1113
TseFI	GTSAC	1 cut(s)	1111
Tsp45I	GTSAC	1 cut(s)	1111
TspRI	CASTG	3 cut(s)	63, 212, 1113
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	608, 1228
XapI	RAATTY	2 cut(s)	726, 1213
XceI	RCATGY	1 cut(s)	948
XspI	CTAG	2 cut(s)	344, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.