Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Reverse (-)

6111358 .. 6114242

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1088700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTGGATGATGAGTAACCTTAAACTGCAGGAAACGGTGCCGTTTGCAGTGATGGTGGCAATGGAAGGTTGTACTATAATATTAACCATTTGGGCAAAATCTGTCATGACAAATTATGGCATGAGCCCCTTTGTTTTTGTCGTCTACACTCACTCCCTTTCCTCTCTCTTCCTCCTCCTCTCTTCTTTCCTCTTTCGCTGCTGCAGCAGCAGAGGAGATTCAACACAGCAATCAGTCTTCACCTGGGCTCTATTCGTTCGATGCTTCCCCTTGGGTTTTACAGGGATAACAGTATCTCAGAATCTTGGATTCCTTGGTTTAAGTTACAGCTCTCCTATTCTTGTGTGTGCCATGGGCCTAATGATCCCATCTTTTTCCTTTCTGCTCTCTATCTCACTCAGGAGGGCGAAACTAGATTGGAGAAGCTCAAGTTTCCAGGCCAAAGTAAGTGGCACATTAATAACAATCATTGGGGCAATAGTGGTTGAACTCTACAAGGGTGAATATATAAGAAAATCTTCAGTTTCCTCTTCATATTGGTATATTAATCAACTTCAACTCCGAGTAGAGAAACTAGGCTTAATCTTCTCCTCAGAGAAAGAGCATTGGGTTGTGGGTGGCCTTTTACTGGCAGCATCTACTTTATCCGTTTCCGTATGGAACATCATTCAGATGGGAACGATGAAACTATATCCACAAGTGGAAGTCATGGAAGTGGTAACTTTTTATAGCTTGCTTGGGACAATCCAATCTGCAATGCTATCTTTGTTCCTAGAGAGAAACCCAAGTGCTTGGAAATTAAAACTCAACGGGGAGCTCCTTCTCGTTGTTTTAACAGCAATTTTCGGGGGTCTAGTTCGAAGTCGTGTTCAACATTGGTGTATGAACATTAAGGGCCCATATTATGTGCCGTTGTTCAAGCCGTTTGGGATTGTTTTTGCAACCATTTTTGGTGTCAGTTTATCTGCAAATAGGCTTTGTTATGGAAGTGTGATGGGAGCAGTCATAACTGGAATGGGGTACTTTATTATAATATGGGGACAAATCAGAGAAGATGAAAAACATGATCAAGATCACTGTGTTGATGAGAATCTCGAATCCAGTTCTGAGAGGAAGGTCCCTCTCTTGCAAGAAGAAAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

382

Amino Acids

42.71

Weight (kDa)

8.7

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	73, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	222, 488, 557, 872, 919
AjnI	CCWGG	2 cut(s)	242, 435
AluBI	AGCT	4 cut(s)	330, 426, 732, 817
AluI	AGCT	4 cut(s)	330, 426, 732, 817
Alw21I	GWGCWC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	4 cut(s)	355, 438, 619, 895
ApaI	GGGCCC	1 cut(s)	899
ApeKI	GCWGC	5 cut(s)	198, 201, 204, 207, 632
AseI	ATTAAT	2 cut(s)	458, 546
Asp700I	GAANNNNTTC	1 cut(s)	517
AspS9I	GGNCC	4 cut(s)	355, 895, 896, 1117
AsuHPI	GGTGA	2 cut(s)	232, 512
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	1 cut(s)	1117
BaeGI	GKGCMC	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	4 cut(s)	128, 250, 819, 899
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	5 cut(s)	185, 188, 216, 219, 644
BccI	CCATC	4 cut(s)	46, 376, 667, 988
BceAI	ACGGC	3 cut(s)	25, 895, 907
BciT130I	CCWGG	2 cut(s)	244, 437
BclI	TGATCA	1 cut(s)	1066
BfaI	CTAG	4 cut(s)	413, 575, 773, 854
BfmI	CTRYAG	2 cut(s)	26, 202
BisI	GCNGC	5 cut(s)	199, 202, 205, 208, 633
BlsI	GCNGC	5 cut(s)	200, 203, 206, 209, 634
Bme1390I	CCNGG	2 cut(s)	244, 437
Bme18I	GGWCC	1 cut(s)	1117
BmgT120I	GGNCC	4 cut(s)	355, 895, 896, 1117
BmiI	GGNNCC	3 cut(s)	39, 897, 1119
BmrFI	CCNGG	2 cut(s)	244, 437
BmsI	GCATC	2 cut(s)	251, 644
BpiI	GAAGAC	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	859
BpuEI	CTTGAG	1 cut(s)	412
BsaBI	GATNNNNATC	2 cut(s)	1071, 1089
BsaJI	CCNNGG	4 cut(s)	243, 270, 313, 351
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	3 cut(s)	633, 1015, 1101
Bse3DI	GCAATG	2 cut(s)	66, 762
Bse8I	GATNNNNATC	2 cut(s)	1071, 1089
BseBI	CCWGG	2 cut(s)	244, 437
BseDI	CCNNGG	4 cut(s)	243, 270, 313, 351
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	2 cut(s)	1071, 1089
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	2 cut(s)	66, 762
BseMII	CTCAG	4 cut(s)	311, 412, 606, 1098
BseNI	ACTGG	3 cut(s)	633, 1015, 1101
BseRI	GAGGAG	4 cut(s)	164, 167, 228, 580
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	5 cut(s)	185, 188, 216, 219, 644
BshFI	GGCC	4 cut(s)	357, 440, 621, 897
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	819
BslFI	GGGAC	3 cut(s)	754, 1053, 1103
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	3 cut(s)	754, 1053, 1103
BsnI	GGCC	4 cut(s)	357, 440, 621, 897
Bsp119I	TTCGAA	1 cut(s)	859
Bsp120I	GGGCCC	1 cut(s)	895
Bsp1286I	GDGCHC	4 cut(s)	128, 250, 819, 899
Bsp143I	GATC	3 cut(s)	363, 1066, 1072
Bsp19I	CCATGG	1 cut(s)	351
BspANI	GGCC	4 cut(s)	357, 440, 621, 897
BspCNI	CTCAG	4 cut(s)	310, 411, 605, 1099
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	39, 897, 1119
BspMAI	CTGCAG	2 cut(s)	30, 206
BspPI	GGATC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	859
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	66, 762
BsrI	ACTGG	3 cut(s)	633, 1015, 1101
BssECI	CCNNGG	4 cut(s)	243, 270, 313, 351
BssMI	GATC	3 cut(s)	363, 1066, 1072
BssT1I	CCWWGG	3 cut(s)	270, 313, 351
Bst2UI	CCWGG	2 cut(s)	244, 437
Bst4CI	ACNGT	3 cut(s)	37, 292, 1079
Bst6I	CTCTTC	3 cut(s)	173, 187, 535
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	4 cut(s)	297, 398, 592, 1107
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	3 cut(s)	366, 1069, 1075
BstMBI	GATC	3 cut(s)	363, 1066, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 207
BstNI	CCWGG	2 cut(s)	244, 437
BstSCI	CCNGG	2 cut(s)	242, 435
BstSFI	CTRYAG	2 cut(s)	26, 202
BstSLI	GKGCMC	1 cut(s)	899
BstV1I	GCAGC	5 cut(s)	185, 188, 216, 219, 644
BstV2I	GAAGAC	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	792
BsuRI	GGCC	4 cut(s)	357, 440, 621, 897
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 1075
Cac8I	GCNNGC	1 cut(s)	734
CciI	TCATGA	1 cut(s)	105
Cfr13I	GGNCC	4 cut(s)	355, 895, 896, 1117
Csp6I	GTAC	2 cut(s)	72, 1021
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	5 cut(s)	106, 121, 352, 709, 1064
CviQI	GTAC	2 cut(s)	72, 1021
DdeI	CTNAG	4 cut(s)	297, 398, 592, 1107
DpnI	GATC	3 cut(s)	365, 1068, 1074
DpnII	GATC	3 cut(s)	363, 1066, 1072
Eam1104I	CTCTTC	3 cut(s)	173, 187, 535
EarI	CTCTTC	3 cut(s)	173, 187, 535
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	3 cut(s)	270, 313, 351
Eco24I	GRGCYC	4 cut(s)	128, 250, 819, 899
Eco47I	GGWCC	1 cut(s)	1117
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	817
EcoO109I	RGGNCCY	2 cut(s)	895, 1117
EcoRII	CCWGG	2 cut(s)	242, 435
EcoT14I	CCWWGG	3 cut(s)	270, 313, 351
EcoT38I	GRGCYC	4 cut(s)	128, 250, 819, 899
ErhI	CCWWGG	3 cut(s)	270, 313, 351
FaeI	CATG	5 cut(s)	109, 124, 355, 712, 1067
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	3 cut(s)	754, 1053, 1103
FatI	CATG	5 cut(s)	105, 120, 351, 708, 1063
FbaI	TGATCA	1 cut(s)	1066
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	199, 202, 205, 208, 633
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	4 cut(s)	128, 250, 819, 899
Fsp4HI	GCNGC	5 cut(s)	199, 202, 205, 208, 633
FspBI	CTAG	4 cut(s)	413, 575, 773, 854
GluI	GCNGC	5 cut(s)	199, 202, 205, 208, 633
HaeIII	GGCC	4 cut(s)	357, 440, 621, 897
Hin1II	CATG	5 cut(s)	109, 124, 355, 712, 1067
HinfI	GANTC	5 cut(s)	218, 301, 309, 1090, 1097
HphI	GGTGA	2 cut(s)	232, 512
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	6 cut(s)	300, 563, 595, 672, 1049, 1108
Hpy188III	TCNNGA	4 cut(s)	106, 400, 1070, 1094
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	59, 830, 1108
HpyCH4III	ACNGT	3 cut(s)	37, 292, 1079
HpyCH4V	TGCA	7 cut(s)	28, 47, 204, 755, 941, 968, 1129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 207
HpyF3I	CTNAG	4 cut(s)	297, 398, 592, 1107
Hsp92II	CATG	5 cut(s)	109, 124, 355, 712, 1067
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	3 cut(s)	363, 1066, 1072
LmnI	GCTCC	3 cut(s)	814, 822, 998
Lsp1109I	GCAGC	5 cut(s)	185, 188, 216, 219, 644
LweI	GCATC	2 cut(s)	251, 644
MaeI	CTAG	4 cut(s)	413, 575, 773, 854
MaeIII	GTNAC	3 cut(s)	14, 323, 718
MalI	GATC	3 cut(s)	365, 1068, 1074
MboI	GATC	3 cut(s)	363, 1066, 1072
MboII	GAAGA	8 cut(s)	160, 174, 229, 510, 522, 577, 1064, 1145
MhlI	GDGCHC	4 cut(s)	128, 250, 819, 899
MluCI	AATT	3 cut(s)	112, 797, 840
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	9 cut(s)	21, 83, 320, 458, 546, 581, 800, 833, 891
MslI	CAYNNNNRTG	2 cut(s)	671, 713
MspR9I	CCNGG	2 cut(s)	244, 437
MvaI	CCWGG	2 cut(s)	244, 437
MwoI	GCNNNNNNNGC	2 cut(s)	204, 207
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	363, 1066, 1072
NlaIII	CATG	5 cut(s)	109, 124, 355, 712, 1067
NlaIV	GGNNCC	3 cut(s)	39, 897, 1119
NspV	TTCGAA	1 cut(s)	859
PagI	TCATGA	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	218, 301, 309, 1090, 1097
PkrI	GCNGC	5 cut(s)	200, 203, 206, 209, 634
PpuMI	RGGWCCY	1 cut(s)	1117
PshBI	ATTAAT	2 cut(s)	458, 546
PsiI	TTATAA	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	819
Psp5II	RGGWCCY	1 cut(s)	1117
Psp6I	CCWGG	2 cut(s)	242, 435
PspGI	CCWGG	2 cut(s)	242, 435
PspN4I	GGNNCC	3 cut(s)	39, 897, 1119
PspOMI	GGGCCC	1 cut(s)	895
PspPI	GGNCC	4 cut(s)	355, 895, 896, 1117
PspPPI	RGGWCCY	1 cut(s)	1117
PstI	CTGCAG	2 cut(s)	30, 206
RsaI	GTAC	2 cut(s)	73, 1022
RsaNI	GTAC	2 cut(s)	72, 1021
RseI	CAYNNNNRTG	2 cut(s)	671, 713
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	9 cut(s)	21, 83, 320, 458, 546, 581, 800, 833, 891
SatI	GCNGC	5 cut(s)	199, 202, 205, 208, 633
Sau3AI	GATC	3 cut(s)	363, 1066, 1072
Sau96I	GGNCC	4 cut(s)	355, 895, 896, 1117
ScrFI	CCNGG	2 cut(s)	244, 437
SduI	GDGCHC	4 cut(s)	128, 250, 819, 899
SetI	ASST	8 cut(s)	21, 70, 245, 332, 428, 734, 819, 1119
SfaNI	GCATC	2 cut(s)	251, 644
SfcI	CTRYAG	2 cut(s)	26, 202
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	1 cut(s)	1117
SmiMI	CAYNNNNRTG	2 cut(s)	671, 713
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	112, 797, 840
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	4 cut(s)	413, 575, 773, 854
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	2 cut(s)	242, 435
StyI	CCWWGG	3 cut(s)	270, 313, 351
TaaI	ACNGT	3 cut(s)	37, 292, 1079
TaqI	TCGA	3 cut(s)	259, 859, 1095
TasI	AATT	3 cut(s)	112, 797, 840
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	5 cut(s)	218, 301, 309, 1090, 1097
Tru1I	TTAA	9 cut(s)	21, 83, 320, 458, 546, 581, 800, 833, 891
Tru9I	TTAA	9 cut(s)	21, 83, 320, 458, 546, 581, 800, 833, 891
TscAI	CASTG	2 cut(s)	54, 1082
TseI	GCWGC	5 cut(s)	198, 201, 204, 207, 632
TspDTI	ATGAA	4 cut(s)	522, 698, 899, 1071
TspGWI	ACGGA	2 cut(s)	637, 643
TspRI	CASTG	2 cut(s)	54, 1082
VpaK11BI	GGWCC	1 cut(s)	1117
VspI	ATTAAT	2 cut(s)	458, 546
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	4 cut(s)	413, 575, 773, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.