Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

26774591 .. 26778499

Gene Structure 3909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGAAGTGTTCAGCTATGGGAAGCGGTGCCGTTTTCAGTTATGGTGACAATGGAAGGTTGTACCATAATATTAACCATTTGGGCAAAAACTGTCATGACAGTTGATGGCATGAGCCCTTTTGTATTTGTCGTCTACACCCACGCCCTTTCCTCTCTCATCCTCCTCCTCTATTCTTTCATCTTTCACTGCCCCAGAAACAGAGGCGGAAGAGAACAGTCACTCTTCAGCTTGAATCTGTTCGTGCGATGCTTCTTCTTGGGTTTAACAGGGATAACAATATCTCAGAACCTTGGATTCCTAGGCCTAAGTTACAGTTCTCCAATTCTTGTGTGTGCCATGGGCCTGATGATCCCAACTTTTTCCTTCCTGCTCTCCGTCATTCTCAGAAGGACAAGGCTAGATTGGAGAAGCTCAAGCTTCCAGGCCAAAGTAAGTGGGACAATAATATCAATCATTGGGGCAGTAGCGGTTGAACTCTACAAGGGTGCATATATAAGAACATCTTCAGTTTCTTCTTCACCTGGGAAGCAACTTCAAGTCTTAGCACAGAAAGCACTTTTGGTCTTCTCCTCAGAACCAACAGAACATTGGGTTGTGGGTGGCATTTTGCTGGCATCTGCTTCTTTATCTGTCTCAGTATGGAACATCATTCAGCTGGGAACCATGAAACTATATCCAGAAGTGGAAGCAATGGAAGTGGTAACTTTTTATAGCTTGCTTGGGACAATACAGAGCGCAATATTATCCTTGTTCTTAGAGAGAAACCCAAGTGCTTGGAGATTAAAACTCAACATGGAGCCCCTTCTCATTATTTTAACAGCAATTTTTGGGGGTCTAGTTCGAAGCCGGGTTCACAATTGGTGCATGAGCATAAAGGGTCCATACTATGTACCGCTGTTCAAGCCATTTGGGATTGTTTTTGCTACAATTTTTGGTGTCAGCTTATCTGCAAATAGTCTGCATTATGGAAGTGTGATAGGATCAGTAGTAATTGGAATGGGGTATTTTGTAATATCATGTGGACAAATCAGAGAAGATGAAGGGCAGCAAGACCAACAATGTGTTGATGAGAGGCTGGAATCTAATTCTGAGAGGAAAGTCCCTCTCTTGCAAGAAGAAAATAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

378

Amino Acids

41.69

Weight (kDa)

8.64

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	4 cut(s)	26, 207, 470, 896
AclWI	GGATC	2 cut(s)	346, 991
AcuI	CTGAAG	2 cut(s)	211, 492
AfaI	GTAC	2 cut(s)	64, 894
AgsI	TTSAA	4 cut(s)	235, 476, 539, 904
AjnI	CCWGG	2 cut(s)	423, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	7 cut(s)	16, 231, 414, 420, 658, 717, 945
AluI	AGCT	7 cut(s)	16, 231, 414, 420, 658, 717, 945
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	346, 991
AoxI	GGCC	3 cut(s)	304, 343, 426
ApeKI	GCWGC	1 cut(s)	1048
Asp700I	GAANNNNTTC	2 cut(s)	239, 505
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	2 cut(s)	343, 881
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	2 cut(s)	58, 513
AsuII	TTCGAA	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	881
AvrII	CCTAGG	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	2 cut(s)	119, 804
BbsI	GAAGAC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	1060
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	425, 525
BcnI	CCSGG	1 cut(s)	851
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	3 cut(s)	302, 401, 839
BisI	GCNGC	1 cut(s)	1049
BlnI	CCTAGG	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	1050
Bme1390I	CCNGG	3 cut(s)	425, 525, 851
Bme18I	GGWCC	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	343, 881
BmiI	GGNNCC	4 cut(s)	30, 664, 801, 882
BmrFI	CCNGG	3 cut(s)	425, 525, 851
BmsI	GCATC	2 cut(s)	239, 626
BpiI	GAAGAC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	851
BsaJI	CCNNGG	4 cut(s)	292, 301, 339, 524
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	425, 525
BseDI	CCNNGG	4 cut(s)	292, 301, 339, 524
BseGI	GGATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	5 cut(s)	299, 400, 588, 651, 1083
BseRI	GAGGAG	3 cut(s)	155, 158, 562
BseXI	GCAGC	1 cut(s)	1060
BseYI	CCCAGC	1 cut(s)	658
BshFI	GGCC	3 cut(s)	306, 345, 428
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	850
BslFI	GGGAC	3 cut(s)	454, 739, 1088
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	3 cut(s)	454, 739, 1088
BsnI	GGCC	3 cut(s)	306, 345, 428
Bsp119I	TTCGAA	1 cut(s)	844
Bsp1286I	GDGCHC	2 cut(s)	119, 804
Bsp143I	GATC	2 cut(s)	351, 983
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	4 cut(s)	26, 207, 470, 896
BspANI	GGCC	3 cut(s)	306, 345, 428
BspCNI	CTCAG	5 cut(s)	298, 399, 587, 650, 1084
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	4 cut(s)	30, 664, 801, 882
BspPI	GGATC	2 cut(s)	346, 991
BspT104I	TTCGAA	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	4 cut(s)	292, 301, 339, 524
BssMI	GATC	2 cut(s)	351, 983
BssT1I	CCWWGG	3 cut(s)	292, 301, 339
Bst2UI	CCWGG	2 cut(s)	425, 525
Bst4CI	ACNGT	4 cut(s)	94, 103, 219, 317
Bst6I	CTCTTC	2 cut(s)	205, 230
BstBI	TTCGAA	1 cut(s)	844
BstC8I	GCNNGC	2 cut(s)	615, 719
BstDEI	CTNAG	8 cut(s)	285, 308, 386, 544, 574, 637, 757, 1092
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	2 cut(s)	354, 986
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	2 cut(s)	351, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 904
BstNI	CCWGG	2 cut(s)	425, 525
BstSCI	CCNGG	3 cut(s)	423, 523, 849
BstV1I	GCAGC	1 cut(s)	1060
BstV2I	GAAGAC	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	306, 345, 428
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	615, 719
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	343, 881
Csp6I	GTAC	2 cut(s)	63, 893
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 681, 716
CviAII	CATG	7 cut(s)	97, 112, 340, 667, 796, 868, 1020
CviQI	GTAC	2 cut(s)	63, 893
DdeI	CTNAG	8 cut(s)	285, 308, 386, 544, 574, 637, 757, 1092
DpnI	GATC	2 cut(s)	353, 985
DpnII	GATC	2 cut(s)	351, 983
Eam1104I	CTCTTC	2 cut(s)	205, 230
EarI	CTCTTC	2 cut(s)	205, 230
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	3 cut(s)	292, 301, 339
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	119, 804
Eco47I	GGWCC	1 cut(s)	881
Eco57I	CTGAAG	2 cut(s)	211, 492
EcoRII	CCWGG	2 cut(s)	423, 523
EcoT14I	CCWWGG	3 cut(s)	292, 301, 339
EcoT38I	GRGCYC	2 cut(s)	119, 804
ErhI	CCWWGG	3 cut(s)	292, 301, 339
FaeI	CATG	7 cut(s)	100, 115, 343, 670, 799, 871, 1023
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	3 cut(s)	454, 739, 1088
FatI	CATG	7 cut(s)	96, 111, 339, 666, 795, 867, 1019
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	1049
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	119, 804
Fsp4HI	GCNGC	1 cut(s)	1049
FspBI	CTAG	3 cut(s)	302, 401, 839
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	1 cut(s)	1049
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	3 cut(s)	306, 345, 428
HapII	CCGG	1 cut(s)	850
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	7 cut(s)	100, 115, 343, 670, 799, 871, 1023
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	235, 297, 1082
HpaII	CCGG	1 cut(s)	850
HphI	GGTGA	2 cut(s)	58, 513
Hpy166II	GTNNAC	3 cut(s)	136, 856, 1025
Hpy188I	TCNGA	5 cut(s)	288, 389, 577, 1034, 1093
Hpy188III	TCNNGA	2 cut(s)	97, 680
Hpy8I	GTNNAC	3 cut(s)	136, 856, 1025
HpyAV	CCTTC	5 cut(s)	50, 376, 384, 815, 1037
HpyCH4III	ACNGT	4 cut(s)	94, 103, 219, 317
HpyCH4V	TGCA	5 cut(s)	491, 867, 953, 964, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 904
HpyF3I	CTNAG	8 cut(s)	285, 308, 386, 544, 574, 637, 757, 1092
Hsp92II	CATG	7 cut(s)	100, 115, 343, 670, 799, 871, 1023
HspAI	GCGC	1 cut(s)	738
Kzo9I	GATC	2 cut(s)	351, 983
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	1060
LweI	GCATC	2 cut(s)	239, 626
MaeI	CTAG	3 cut(s)	302, 401, 839
MaeIII	GTNAC	4 cut(s)	46, 219, 311, 703
MalI	GATC	2 cut(s)	353, 985
MboI	GATC	2 cut(s)	351, 983
MboII	GAAGA	9 cut(s)	217, 222, 247, 498, 507, 510, 559, 1049, 1130
MfeI	CAATTG	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	119, 804
MluCI	AATT	6 cut(s)	324, 825, 859, 930, 993, 1087
MnlI	CCTC	9 cut(s)	163, 173, 176, 179, 197, 583, 1068, 1089, 1116
MroXI	GAANNNNTTC	2 cut(s)	239, 505
MseI	TTAA	4 cut(s)	74, 266, 785, 818
MspA1I	CMGCKG	2 cut(s)	658, 898
MspI	CCGG	1 cut(s)	850
MspR9I	CCNGG	3 cut(s)	425, 525, 851
MunI	CAATTG	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	425, 525
MwoI	GCNNNNNNNGC	2 cut(s)	554, 904
NciI	CCSGG	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	351, 983
NlaIII	CATG	7 cut(s)	100, 115, 343, 670, 799, 871, 1023
NlaIV	GGNNCC	4 cut(s)	30, 664, 801, 882
NmuCI	GTSAC	2 cut(s)	46, 219
NspV	TTCGAA	1 cut(s)	844
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	239, 505
PfeI	GAWTC	3 cut(s)	235, 297, 1082
PkrI	GCNGC	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	423, 523
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	2 cut(s)	423, 523
PspN4I	GGNNCC	4 cut(s)	30, 664, 801, 882
PspPI	GGNCC	2 cut(s)	343, 881
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	64, 894
RsaNI	GTAC	2 cut(s)	63, 893
SaqAI	TTAA	4 cut(s)	74, 266, 785, 818
SatI	GCNGC	1 cut(s)	1049
Sau3AI	GATC	2 cut(s)	351, 983
Sau96I	GGNCC	2 cut(s)	343, 881
ScrFI	CCNGG	3 cut(s)	425, 525, 851
SduI	GDGCHC	2 cut(s)	119, 804
SfaNI	GCATC	2 cut(s)	239, 626
SfuI	TTCGAA	1 cut(s)	844
SinI	GGWCC	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	6 cut(s)	324, 825, 859, 930, 993, 1087
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	26, 207, 470, 896
SspI	AATATT	2 cut(s)	72, 744
SspMI	CTAG	3 cut(s)	302, 401, 839
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	423, 523, 849
StyI	CCWWGG	3 cut(s)	292, 301, 339
TaaI	ACNGT	4 cut(s)	94, 103, 219, 317
TaqI	TCGA	1 cut(s)	844
TasI	AATT	6 cut(s)	324, 825, 859, 930, 993, 1087
TfiI	GAWTC	3 cut(s)	235, 297, 1082
Tru1I	TTAA	4 cut(s)	74, 266, 785, 818
Tru9I	TTAA	4 cut(s)	74, 266, 785, 818
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	46, 219
TseI	GCWGC	1 cut(s)	1048
Tsp45I	GTSAC	2 cut(s)	46, 219
TspDTI	ATGAA	3 cut(s)	169, 683, 1056
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	239, 505
XspI	CTAG	3 cut(s)	302, 401, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.