Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

64087787 .. 64090253

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATGATGGGGATCATTATGAGAAGTGTTAAGCTTGTAGAAATGTTGCCGTTTTCGGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCGCCATGACAGATTATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGATCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAGAAGTACAAGTGCTACACAACAATCACTCTTCTCCTTCGGTCTTTTCGTTCGATGCTTCCTCTTGGGTTTAACAGGGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCGTCCTCAGGAGGACAAAGACAGATTGGAGAAGCTCAAGTTTCCAAGCCAAAGTCGTTGGCACTATACTCTCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATATATAAGACCGTCTTCAGTTTTGTCCTCTTCTTCATACTTGATCTTATTTCAGAAAGCAGCACAATATTTGGTCTTCTCCTCAACAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGATAGGAACTATGAAACTATATCCGGAAGTGGAAGTAATGGAAGTGGTATCATATTATAGCTTGCTTGGGACTATCCAGTGTGTTATATTCTCTTTATTCATAGAAAGAAGCCTAGGTGCTTGGAAATTAAAGCTCAACGTGGATCTCCTTCTCATTGTTTTAACAGCATGTTTTGGGGGTCTAGTTCGAAGCCGGGTTCACAACTGGTGCATAAACATGAAGGGGACACATTATGTGCCAATGTTCAAGCCATTTGGCATTGTTTTCGCCACCATTTTCGGTGTCAGCTTATCGGCAAATAATCTTCATTATGGAAGTGTGTTAGGAGCAGTGGTGACCGGAGTAGGGTACTTTACTATAATGTGGGGGCAGATCAAAGAAGATGAAGATGAACAATGTGTTAATCATAATGATCAGAGCCATCTGGAATCTACAAATTCTGAAGCCAAGGTCCCTCTCTTGGAAGAAGAAATCGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

384

Amino Acids

42.53

Weight (kDa)

7.06

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	694
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	20, 822
AcsI	RAATTY	2 cut(s)	621, 1108
AcuI	CTGAAG	2 cut(s)	507, 1134
AfaI	GTAC	3 cut(s)	82, 217, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	1017, 1132
AflII	CTTAAG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	491, 919
AluBI	AGCT	6 cut(s)	34, 293, 429, 732, 805, 960
AluI	AGCT	6 cut(s)	34, 293, 429, 732, 805, 960
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	2 cut(s)	20, 822
Aor13HI	TCCGGA	1 cut(s)	694
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	621, 1108
AspA2I	CCTAGG	1 cut(s)	784
AspS9I	GGNCC	3 cut(s)	358, 503, 1123
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	2 cut(s)	70, 1018
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	503, 1123
AvrII	CCTAGG	1 cut(s)	784
AxyI	CCTNAGG	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	513, 574
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	55, 1101
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	919, 953
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	3 cut(s)	344, 785, 854
BfmI	CTRYAG	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	567
BlnI	CCTAGG	1 cut(s)	784
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	866
Bme18I	GGWCC	2 cut(s)	503, 1123
BmgT120I	GGNCC	3 cut(s)	358, 503, 1123
BmiI	GGNNCC	3 cut(s)	504, 637, 1125
BmrFI	CCNGG	1 cut(s)	866
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	513, 574
Bpu14I	TTCGAA	1 cut(s)	859
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	354, 784, 1119
BsaWI	WCCGGW	2 cut(s)	694, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	1017, 1132
Bse1I	ACTGG	2 cut(s)	748, 881
Bse21I	CCTNAGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	354, 784, 1119
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	1017, 1132
BseMII	CTCAG	2 cut(s)	415, 666
BseNI	ACTGG	2 cut(s)	748, 881
BseRI	GAGGAG	2 cut(s)	173, 577
BseXI	GCAGC	1 cut(s)	578
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	695, 865, 1011
BslFI	GGGAC	3 cut(s)	754, 910, 1109
BslI	CCNNNNNNNGG	2 cut(s)	1017, 1132
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	3 cut(s)	754, 910, 1109
BsnI	GGCC	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	694
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	414, 665
BspEI	TCCGGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	504, 637, 1125
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	2 cut(s)	20, 822
BspT104I	TTCGAA	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	748, 881
BssECI	CCNNGG	3 cut(s)	354, 784, 1119
BssMI	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
BssT1I	CCWWGG	3 cut(s)	354, 784, 1119
Bst4CI	ACNGT	2 cut(s)	332, 519
Bst6I	CTCTTC	2 cut(s)	245, 541
BstAFI	CTTAAG	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	2 cut(s)	401, 652
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	1006
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	6 cut(s)	15, 177, 552, 817, 1047, 1087
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	843
BstPI	GGTNACC	1 cut(s)	1006
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	2 cut(s)	513, 574
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	2 cut(s)	205, 1008
BtsIMutI	CAGTG	3 cut(s)	205, 755, 1008
Cac8I	GCNNGC	1 cut(s)	734
Cfr13I	GGNCC	3 cut(s)	358, 503, 1123
Csp6I	GTAC	3 cut(s)	81, 216, 1021
CviAII	CATG	7 cut(s)	115, 130, 161, 355, 472, 840, 889
CviQI	GTAC	3 cut(s)	81, 216, 1021
DdeI	CTNAG	2 cut(s)	401, 652
DpnI	GATC	6 cut(s)	14, 176, 551, 816, 1046, 1086
DpnII	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
Eam1104I	CTCTTC	2 cut(s)	245, 541
EarI	CTCTTC	2 cut(s)	245, 541
Eco130I	CCWWGG	3 cut(s)	354, 784, 1119
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	503, 1123
Eco57I	CTGAAG	2 cut(s)	507, 1134
Eco81I	CCTNAGG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	1006
EcoO109I	RGGNCCY	1 cut(s)	1123
EcoO65I	GGTNACC	1 cut(s)	1006
EcoT14I	CCWWGG	3 cut(s)	354, 784, 1119
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	3 cut(s)	354, 784, 1119
FaeI	CATG	7 cut(s)	118, 133, 164, 358, 475, 843, 892
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FaqI	GGGAC	3 cut(s)	754, 910, 1109
FatI	CATG	7 cut(s)	114, 129, 160, 354, 471, 839, 888
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	3 cut(s)	344, 785, 854
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	695, 865, 1011
Hin1II	CATG	7 cut(s)	118, 133, 164, 358, 475, 843, 892
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	1 cut(s)	1100
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	3 cut(s)	695, 865, 1011
HphI	GGTGA	2 cut(s)	70, 1018
Hpy166II	GTNNAC	2 cut(s)	93, 871
Hpy188I	TCNGA	4 cut(s)	561, 672, 1089, 1114
Hpy188III	TCNNGA	3 cut(s)	403, 695, 1097
Hpy8I	GTNNAC	2 cut(s)	93, 871
HpyAV	CCTTC	5 cut(s)	68, 256, 391, 830, 886
HpyCH4III	ACNGT	2 cut(s)	332, 519
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	3 cut(s)	210, 311, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	401, 652
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	7 cut(s)	118, 133, 164, 358, 475, 843, 892
Kpn2I	TCCGGA	1 cut(s)	694
Ksp22I	TGATCA	1 cut(s)	1084
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
LmnI	GCTCC	2 cut(s)	635, 998
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	344, 785, 854
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	2 cut(s)	326, 1006
MalI	GATC	6 cut(s)	14, 176, 551, 816, 1046, 1086
MboI	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	5 cut(s)	84, 339, 621, 797, 1108
MroI	TCCGGA	1 cut(s)	694
MseI	TTAA	7 cut(s)	30, 92, 281, 323, 800, 833, 1074
MslI	CAYNNNNRTG	1 cut(s)	887
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	3 cut(s)	695, 865, 1011
MspR9I	CCNGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	866
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
NlaIII	CATG	7 cut(s)	118, 133, 164, 358, 475, 843, 892
NlaIV	GGNNCC	3 cut(s)	504, 637, 1125
NmuCI	GTSAC	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	843
NspV	TTCGAA	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	1100
PkrI	GCNGC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	1123
Psp5II	RGGWCCY	1 cut(s)	1123
PspEI	GGTNACC	1 cut(s)	1006
PspN4I	GGNNCC	3 cut(s)	504, 637, 1125
PspPI	GGNCC	3 cut(s)	358, 503, 1123
PspPPI	RGGWCCY	1 cut(s)	1123
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	3 cut(s)	82, 217, 1022
RsaNI	GTAC	3 cut(s)	81, 216, 1021
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	7 cut(s)	30, 92, 281, 323, 800, 833, 1074
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	6 cut(s)	12, 174, 549, 814, 1044, 1084
Sau96I	GGNCC	3 cut(s)	358, 503, 1123
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	2 cut(s)	503, 1123
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	322, 430
SmoI	CTYRAG	2 cut(s)	322, 430
Sse9I	AATT	5 cut(s)	84, 339, 621, 797, 1108
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	3 cut(s)	344, 785, 854
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	3 cut(s)	354, 784, 1119
TaaI	ACNGT	2 cut(s)	332, 519
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	173, 262, 859
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	84, 339, 621, 797, 1108
TatI	WGTACW	2 cut(s)	80, 215
TfiI	GAWTC	1 cut(s)	1100
Tru1I	TTAA	7 cut(s)	30, 92, 281, 323, 800, 833, 1074
Tru9I	TTAA	7 cut(s)	30, 92, 281, 323, 800, 833, 1074
TscAI	CASTG	3 cut(s)	212, 755, 1008
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	1006
TspDTI	ATGAA	7 cut(s)	531, 698, 760, 905, 968, 1071, 1077
TspRI	CASTG	3 cut(s)	212, 755, 1008
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	503, 1123
XapI	RAATTY	2 cut(s)	621, 1108
XceI	RCATGY	1 cut(s)	843
XmaJI	CCTAGG	1 cut(s)	784
XspI	CTAG	3 cut(s)	344, 785, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.