Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Reverse (-)

22121375 .. 22123881

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGATTAATGGATACAAGATGGGAAACCATAGTTCCATTTATTGTTATGGCGTTGATGGAGGCATGTACCATTGCACTCACCATCTTGGCTAAGACCGCACTGACCGGTGGCATGAGCCCTTTCGTGTTCATCGTCTACACCAACGCTCTTGGCTCTCTCCTTCTCCTCCCTTACTCTTTCTACTTCCATAGAGATGAAAGTGACGATGAACCCTTCCTCACGAAACCTTCCCTTGTTCGTATCTTCCTACTCGGTTTTACAGGGGTGTTTTTGTTCCAGAACATGGCATTTTTGGGGCTAAGTTATAGCTCTCCAATTGTGGTATGTGCCATGGGCTTGCAGTCACCTGCTTTCTCCTTCTTGCTATCTCTTGCTCTTGGTAAGGAAGGAGGGTTAGGATGGGCAAGTAAGAGAACAAAAGGAAGAGTGATAGGCACGTTGATATGTTTCACAGGAGCCTTTGTTGAAGTTATTTACTTAGGACCTTTTATAAGACCTTCTCCTCCTTCATCCCCAACCTCCAATTTCCTTACTACAATCTCACACTACTTAACTTTCTTCAAAAATTCTGACAATTGGGCTCTCGGCTCTCTCCTCCTTGCATGCGCCACGCTCTCCATCTCCATTTGGAATATTATACAGTTGGATACAGTCCAAAAATATCCTCAAGTGATGAAAGTAGTGTCTGCCTATAGTTTAGCTGGGACACTCCAATGTGCAATCTTCTCAGCGTTCATGGAGCCAGACCTAAGTGCATGGGAACTCAAACTTAACATGGACCTATATCTCATTATTGCCACGGGAATATTTGGGAGCATAATCAGAACAAGTGTTCAAGTGAAGTGCTCCAAAATGAAGGGGCCTTATTATGTGCCACTCTTCAAGCCATTTGGGATCCTTTGGGCTTCCATTTTTGGCACAAGCTTCTTTGTCAATAGTCTTCACTATGGAAGTGTGTTAGGAGCTGCTATAGCAGGAACTGGATATCTATTGATAATGTGGAGTCAAGTTCAAAAAGATGATCCAAATGAAACGGTGGAGAAAAACGATAATCATCAATTGGATTCAGATGAACAGACAACTCCACTTTTGCTCGCGAATGGTGATTTTGATCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

374

Amino Acids

41.13

Weight (kDa)

5.58

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	16 - 156	4.9e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	1100
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	892, 905, 1019
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	470, 565, 839, 886, 1016
AluBI	AGCT	4 cut(s)	312, 704, 927, 968
AluI	AGCT	4 cut(s)	312, 704, 927, 968
Alw21I	GWGCWC	1 cut(s)	851
AlwI	GGATC	3 cut(s)	892, 905, 1019
AlwNI	CAGNNNCTG	1 cut(s)	983
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	1 cut(s)	968
ApoI	RAATTY	1 cut(s)	568
AseI	ATTAAT	1 cut(s)	8
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	3 cut(s)	485, 781, 863
AsuHPI	GGTGA	3 cut(s)	73, 339, 1118
AvaII	GGWCC	2 cut(s)	485, 781
BamHI	GGATCC	1 cut(s)	897
BanII	GRGCYC	2 cut(s)	122, 586
BbsI	GAAGAC	1 cut(s)	935
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	1 cut(s)	955
BccI	CCATC	5 cut(s)	15, 52, 92, 396, 629
BciVI	GTATCC	2 cut(s)	7, 643
BclI	TGATCA	1 cut(s)	1114
BfmI	CTRYAG	2 cut(s)	694, 972
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	2 cut(s)	7, 643
BisI	GCNGC	1 cut(s)	969
BlsI	GCNGC	1 cut(s)	970
Bme18I	GGWCC	2 cut(s)	485, 781
BmgT120I	GGNCC	3 cut(s)	485, 781, 863
BmiI	GGNNCC	4 cut(s)	460, 744, 864, 899
BpiI	GAAGAC	1 cut(s)	935
BpuEI	CTTGAG	1 cut(s)	654
BsaBI	GATNNNNATC	2 cut(s)	1056, 1113
BsaJI	CCNNGG	2 cut(s)	333, 801
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	988
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	1056, 1113
BseDI	CCNNGG	2 cut(s)	333, 801
BseGI	GGATG	2 cut(s)	407, 512
BseJI	GATNNNNATC	2 cut(s)	1056, 1113
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	988
BseRI	GAGGAG	3 cut(s)	158, 495, 587
BseXI	GCAGC	1 cut(s)	955
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	1100
BshFI	GGCC	1 cut(s)	865
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	865
Bsp1286I	GDGCHC	3 cut(s)	122, 586, 851
Bsp143I	GATC	3 cut(s)	897, 1024, 1114
Bsp19I	CCATGG	1 cut(s)	333
Bsp68I	TCGCGA	1 cut(s)	1100
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	1 cut(s)	743
BspFNI	CGCG	1 cut(s)	1100
BspLI	GGNNCC	4 cut(s)	460, 744, 864, 899
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	3 cut(s)	892, 905, 1019
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	988
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	333, 801
BssMI	GATC	3 cut(s)	897, 1024, 1114
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	645, 655, 1039
Bst6I	CTCTTC	2 cut(s)	421, 887
BstC8I	GCNNGC	3 cut(s)	341, 607, 1098
BstDEI	CTNAG	5 cut(s)	93, 302, 481, 730, 752
BstDSI	CCRYGG	2 cut(s)	333, 801
BstF5I	GGATG	2 cut(s)	407, 512
BstFNI	CGCG	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	3 cut(s)	900, 1027, 1117
BstMBI	GATC	3 cut(s)	897, 1024, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 974
BstNSI	RCATGY	2 cut(s)	69, 609
BstSFI	CTRYAG	2 cut(s)	694, 972
BstUI	CGCG	1 cut(s)	1100
BstV1I	GCAGC	1 cut(s)	955
BstV2I	GAAGAC	1 cut(s)	935
BstX2I	RGATCY	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	897
BsuI	GTATCC	2 cut(s)	7, 643
BsuRI	GGCC	1 cut(s)	865
BtgI	CCRYGG	2 cut(s)	333, 801
BtsCI	GGATG	2 cut(s)	407, 512
BtsIMutI	CAGTG	1 cut(s)	101
BtuMI	TCGCGA	1 cut(s)	1100
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	341, 607, 1098
CaiI	CAGNNNCTG	1 cut(s)	983
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	485, 781, 863
Csp6I	GTAC	1 cut(s)	69
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	8 cut(s)	66, 115, 286, 334, 606, 739, 759, 778
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	5 cut(s)	93, 302, 481, 730, 752
DpnI	GATC	3 cut(s)	899, 1026, 1116
DpnII	GATC	3 cut(s)	897, 1024, 1114
Eam1104I	CTCTTC	2 cut(s)	421, 887
EarI	CTCTTC	2 cut(s)	421, 887
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	122, 586
Eco32I	GATATC	1 cut(s)	989
Eco47I	GGWCC	2 cut(s)	485, 781
EcoO109I	RGGNCCY	2 cut(s)	485, 863
EcoRV	GATATC	1 cut(s)	989
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	122, 586
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	8 cut(s)	69, 118, 289, 337, 609, 742, 762, 781
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	8 cut(s)	65, 114, 285, 333, 605, 738, 758, 777
FbaI	TGATCA	1 cut(s)	1114
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	969
FokI	GGATG	2 cut(s)	414, 499
FriOI	GRGCYC	2 cut(s)	122, 586
Fsp4HI	GCNGC	1 cut(s)	969
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	1 cut(s)	969
GsaI	CCCAGC	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	8 cut(s)	69, 118, 289, 337, 609, 742, 762, 781
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	2 cut(s)	1006, 1067
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	73, 339, 1118
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	574, 827, 1072
Hpy188III	TCNNGA	3 cut(s)	223, 280, 1099
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	8 cut(s)	173, 226, 240, 370, 383, 510, 519, 853
HpyCH4III	ACNGT	3 cut(s)	645, 655, 1039
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	77, 343, 605, 722, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 974
HpyF3I	CTNAG	5 cut(s)	93, 302, 481, 730, 752
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	8 cut(s)	69, 118, 289, 337, 609, 742, 762, 781
HspAI	GCGC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	1114
Kzo9I	GATC	3 cut(s)	897, 1024, 1114
LmnI	GCTCC	5 cut(s)	458, 742, 816, 854, 965
LpnPI	CCDG	9 cut(s)	121, 249, 293, 363, 441, 690, 759, 963, 969
Lsp1109I	GCAGC	1 cut(s)	955
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	203, 345
MalI	GATC	3 cut(s)	899, 1026, 1116
MboI	GATC	3 cut(s)	897, 1024, 1114
MboII	GAAGA	6 cut(s)	238, 438, 553, 718, 874, 935
MfeI	CAATTG	3 cut(s)	318, 577, 1061
MflI	RGATCY	1 cut(s)	897
MhlI	GDGCHC	3 cut(s)	122, 586, 851
MluCI	AATT	5 cut(s)	318, 526, 568, 577, 1061
MlyI	GAGTC	1 cut(s)	1015
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	8 cut(s)	55, 179, 230, 386, 516, 532, 608, 678
MseI	TTAA	4 cut(s)	8, 554, 774, 1123
MslI	CAYNNNNRTG	2 cut(s)	195, 715
MspI	CCGG	1 cut(s)	108
MunI	CAATTG	3 cut(s)	318, 577, 1061
MvnI	CGCG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	2 cut(s)	98, 974
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	897, 1024, 1114
NlaIII	CATG	8 cut(s)	69, 118, 289, 337, 609, 742, 762, 781
NlaIV	GGNNCC	4 cut(s)	460, 744, 864, 899
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	203, 345
NruI	TCGCGA	1 cut(s)	1100
NspI	RCATGY	2 cut(s)	69, 609
PaeI	GCATGC	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	970
PleI	GAGTC	1 cut(s)	1014
PpsI	GAGTC	1 cut(s)	1014
PpuMI	RGGWCCY	1 cut(s)	485
PshBI	ATTAAT	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	4 cut(s)	460, 744, 864, 899
PspPI	GGNCC	3 cut(s)	485, 781, 863
PspPPI	RGGWCCY	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	897
RruI	TCGCGA	1 cut(s)	1100
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	2 cut(s)	195, 715
SaqAI	TTAA	4 cut(s)	8, 554, 774, 1123
SatI	GCNGC	1 cut(s)	969
Sau3AI	GATC	3 cut(s)	897, 1024, 1114
Sau96I	GGNCC	3 cut(s)	485, 781, 863
SchI	GAGTC	1 cut(s)	1015
SduI	GDGCHC	3 cut(s)	122, 586, 851
SfcI	CTRYAG	2 cut(s)	694, 972
SinI	GGWCC	2 cut(s)	485, 781
SmiMI	CAYNNNNRTG	2 cut(s)	195, 715
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	5 cut(s)	318, 526, 568, 577, 1061
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	2 cut(s)	637, 810
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	645, 655, 1039
TaiI	ACGT	1 cut(s)	443
TasI	AATT	5 cut(s)	318, 526, 568, 577, 1061
TfiI	GAWTC	1 cut(s)	1067
Tru1I	TTAA	4 cut(s)	8, 554, 774, 1123
Tru9I	TTAA	4 cut(s)	8, 554, 774, 1123
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	2 cut(s)	203, 345
TseI	GCWGC	1 cut(s)	968
Tsp45I	GTSAC	2 cut(s)	203, 345
TspDTI	ATGAA	9 cut(s)	121, 213, 225, 501, 692, 727, 872, 1047, 1089
TspRI	CASTG	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	485, 781
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	568
XceI	RCATGY	2 cut(s)	69, 609
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.