Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Reverse (-)

5046555 .. 5048506

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCAGAAGAGATTCAACACAACAATCAGTCTTAATCTGGGCTCTCTTCGTTCGATGCTTCCTCTTGGGTCTTACAGGGACGACAAAGCTAAATTGGAGAAGCTCAAGCTTCCAGGCCAAAGTAAGTGGCACATTAATATCAATAATCGGGGCAATAGTGGTTGAACTCTACAAGGGCGAATATATAAGAAAATCTTCAGTTTCCTCTTCACATTGGAATAATCTTCAACTCCTGGTAGAGAAAGTAGGCTTAATTTTCTCCTCAGAGAAAGAGCATTGGGTTGTGGGTGGCCTCTTACTGGCAGCATCGACTTTATCTGTCTCCGTATGGAACATTATTCAGATGGGGACTATGAAACTATATCCACAAGTGGAAGTAATAGAAGTGGTAACTTTTTATAGCTTGCTTGGGACAACCCAATCTGCAATACTATCTTTGTTCCTAGAAAGAAACCCAGGTGCTGGGAAATTAAAACTCAACAGGGAGCTCCTTCTCATTGTTTTAACAGCAATTTTTGGGGGTCTAGTTCGAAGCCGTGTTCAACATTGGTGTATGAACATGAAGGGCCCATATTATGTGCCATTGTTCAAGCCACTTGGGATTGTTTTTGCAACCATTTTTGGTGTCAGTTTATCCGCAACTAGCCTTAGTTATGGAAGAGAAGATGAAATACTTGATCAAGTTCAACAATGTGTTGATGAGAATCTGGAATCTAGTTCTGAGAGGAAGGTCCCTCTCTTGCAAGAAGAAAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

254

Amino Acids

28.15

Weight (kDa)

8.73

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	301, 464
AgsI	TTSAA	6 cut(s)	18, 167, 230, 545, 592, 689
AjnI	CCWGG	3 cut(s)	114, 234, 457
AluBI	AGCT	5 cut(s)	91, 105, 111, 405, 490
AluI	AGCT	5 cut(s)	91, 105, 111, 405, 490
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	3 cut(s)	117, 292, 568
ApaI	GGGCCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	305
AseI	ATTAAT	1 cut(s)	137
Asp700I	GAANNNNTTC	2 cut(s)	13, 196
AspS9I	GGNCC	3 cut(s)	568, 569, 733
AsuII	TTCGAA	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	1 cut(s)	572
BanII	GRGCYC	3 cut(s)	46, 492, 572
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	3 cut(s)	116, 236, 459
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	4 cut(s)	446, 527, 645, 717
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	3 cut(s)	116, 236, 459
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	568, 569, 733
BmiI	GGNNCC	2 cut(s)	570, 735
BmrFI	CCNGG	3 cut(s)	116, 236, 459
BmsI	GCATC	2 cut(s)	47, 317
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 464
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	116, 236, 459
BseDI	CCNNGG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	301, 464
BseMII	CTCAG	2 cut(s)	279, 714
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	119, 294, 570
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	4 cut(s)	94, 364, 427, 719
BslI	CCNNNNNNNGG	2 cut(s)	301, 464
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	4 cut(s)	94, 364, 427, 719
BsnI	GGCC	3 cut(s)	119, 294, 570
Bsp119I	TTCGAA	1 cut(s)	532
Bsp120I	GGGCCC	1 cut(s)	568
Bsp1286I	GDGCHC	3 cut(s)	46, 492, 572
Bsp143I	GATC	1 cut(s)	679
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	3 cut(s)	119, 294, 570
BspCNI	CTCAG	2 cut(s)	278, 715
BspLI	GGNNCC	2 cut(s)	570, 735
BspT104I	TTCGAA	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	679
Bst2UI	CCWGG	3 cut(s)	116, 236, 459
Bst6I	CTCTTC	4 cut(s)	4, 53, 214, 655
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	265, 650, 723
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	679
BstNI	CCWGG	3 cut(s)	116, 236, 459
BstSCI	CCNGG	3 cut(s)	114, 234, 457
BstSLI	GKGCMC	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	119, 294, 570
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	568, 569, 733
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	1 cut(s)	562
DdeI	CTNAG	3 cut(s)	265, 650, 723
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
Eam1104I	CTCTTC	4 cut(s)	4, 53, 214, 655
EarI	CTCTTC	4 cut(s)	4, 53, 214, 655
Ecl136II	GAGCTC	1 cut(s)	490
Eco24I	GRGCYC	3 cut(s)	46, 492, 572
Eco47I	GGWCC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	2 cut(s)	568, 733
EcoRII	CCWGG	3 cut(s)	114, 234, 457
EcoT38I	GRGCYC	3 cut(s)	46, 492, 572
FaeI	CATG	1 cut(s)	565
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FaqI	GGGAC	4 cut(s)	94, 364, 427, 719
FatI	CATG	1 cut(s)	561
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	306
FriOI	GRGCYC	3 cut(s)	46, 492, 572
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	4 cut(s)	446, 527, 645, 717
GluI	GCNGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	119, 294, 570
Hin1II	CATG	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	3 cut(s)	14, 706, 713
Hpy188I	TCNGA	3 cut(s)	268, 345, 724
Hpy188III	TCNNGA	1 cut(s)	710
HpyAV	CCTTC	3 cut(s)	503, 559, 724
HpyCH4V	TGCA	4 cut(s)	428, 614, 745, 758
HpyF3I	CTNAG	3 cut(s)	265, 650, 723
Hsp92II	CATG	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	2 cut(s)	487, 495
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	2 cut(s)	47, 317
MaeI	CTAG	4 cut(s)	446, 527, 645, 717
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	8 cut(s)	21, 40, 189, 201, 218, 672, 677, 761
MhlI	GDGCHC	3 cut(s)	46, 492, 572
MluCI	AATT	4 cut(s)	94, 255, 470, 513
MnlI	CCTC	6 cut(s)	74, 217, 274, 305, 720, 747
MroXI	GAANNNNTTC	2 cut(s)	13, 196
MseI	TTAA	5 cut(s)	35, 137, 254, 473, 506
MspR9I	CCNGG	3 cut(s)	116, 236, 459
MvaI	CCWGG	3 cut(s)	116, 236, 459
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	2 cut(s)	570, 735
NspV	TTCGAA	1 cut(s)	532
PdmI	GAANNNNTTC	2 cut(s)	13, 196
PfeI	GAWTC	3 cut(s)	14, 706, 713
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	3 cut(s)	114, 234, 457
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	3 cut(s)	114, 234, 457
PspN4I	GGNNCC	2 cut(s)	570, 735
PspOMI	GGGCCC	1 cut(s)	568
PspPI	GGNCC	3 cut(s)	568, 569, 733
PspPPI	RGGWCCY	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	5 cut(s)	35, 137, 254, 473, 506
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	3 cut(s)	568, 569, 733
ScrFI	CCNGG	3 cut(s)	116, 236, 459
SduI	GDGCHC	3 cut(s)	46, 492, 572
SetI	ASST	7 cut(s)	93, 107, 113, 407, 463, 492, 735
SfaNI	GCATC	2 cut(s)	47, 317
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	1 cut(s)	733
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	4 cut(s)	94, 255, 470, 513
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	4 cut(s)	446, 527, 645, 717
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	114, 234, 457
TaqI	TCGA	3 cut(s)	55, 311, 532
TasI	AATT	4 cut(s)	94, 255, 470, 513
TfiI	GAWTC	3 cut(s)	14, 706, 713
Tru1I	TTAA	5 cut(s)	35, 137, 254, 473, 506
Tru9I	TTAA	5 cut(s)	35, 137, 254, 473, 506
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	371, 572, 578, 684
TspGWI	ACGGA	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	137
XmnI	GAANNNNTTC	2 cut(s)	13, 196
XspI	CTAG	4 cut(s)	446, 527, 645, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.