Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

71123716 .. 71126252

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG412100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGATGGGGATCATTATGAGAAGTGTTAAGCTTGTAGAAATGTTGCCGTTTTCAGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCTCCATGACAGAATATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGTTCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAGAAGTACAAGTGCTACACAACAATCACTCTTCTCCTTCGGTCTCTTTGTTCGATGCTTCCTCTTGGGTTTAACAGGGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCATCCTCAGGAGGACAAAGACAGATTGGAGAAGCTCAAGCTTCCAAGCCAAAGTAGTTGGCACTATAATATCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATACATAAGACCATCTTCAGTTTTGTCCTCGTCTTCATACTCGATCTTATTTCAGAAAGCAAGACAATATTTGGTCTTCTCCTCACCAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGGTAATTCAATTCAATCTCTCCCAAATAACATTCCATTTTAAATCTTCCATTAATTCATTGACTATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

247

Amino Acids

27.53

Weight (kDa)

9.51

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	82, 217
AflII	CTTAAG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	491, 680, 685
AluBI	AGCT	4 cut(s)	34, 293, 429, 435
AluI	AGCT	4 cut(s)	34, 293, 429, 435
Alw26I	GTCTC	2 cut(s)	257, 655
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	621
AseI	ATTAAT	1 cut(s)	723
AspS9I	GGNCC	2 cut(s)	358, 503
AsuHPI	GGTGA	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	531, 574
BccI	CCATC	2 cut(s)	55, 526
BceAI	ACGGC	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	257, 655
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	358, 503
BmiI	GGNNCC	2 cut(s)	504, 637
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	531, 574
BpuEI	CTTGAG	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	177, 396
BseJI	GATNNNNATC	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	415, 666
BseRI	GAGGAG	2 cut(s)	173, 577
BshFI	GGCC	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	257, 655
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	12, 549
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	414, 665
BspLI	GGNNCC	2 cut(s)	504, 637
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	12, 549
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	401, 652
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	177, 396
BstKTI	GATC	2 cut(s)	15, 552
BstMAI	GTCTC	2 cut(s)	257, 655
BstMBI	GATC	2 cut(s)	12, 549
BstSFI	CTRYAG	1 cut(s)	208
BstV2I	GAAGAC	2 cut(s)	531, 574
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	177, 396
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	63, 205
Cfr13I	GGNCC	2 cut(s)	358, 503
Csp6I	GTAC	2 cut(s)	81, 216
CviAII	CATG	5 cut(s)	115, 130, 161, 355, 472
CviQI	GTAC	2 cut(s)	81, 216
DdeI	CTNAG	2 cut(s)	401, 652
DpnI	GATC	2 cut(s)	14, 551
DpnII	GATC	2 cut(s)	12, 549
DraI	TTTAAA	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	5 cut(s)	118, 133, 164, 358, 475
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FatI	CATG	5 cut(s)	114, 129, 160, 354, 471
FokI	GGATG	2 cut(s)	164, 383
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	5 cut(s)	118, 133, 164, 358, 475
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	32, 433
HpaI	GTTAAC	1 cut(s)	93
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	68, 256, 391
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	210, 311
HpyF3I	CTNAG	2 cut(s)	401, 652
Hsp92II	CATG	5 cut(s)	118, 133, 164, 358, 475
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	12, 549
LmnI	GCTCC	1 cut(s)	635
LpnPI	CCDG	6 cut(s)	85, 270, 388, 606, 618, 656
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	14, 551
MboI	GATC	2 cut(s)	12, 549
MboII	GAAGA	5 cut(s)	232, 513, 531, 574, 708
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	84, 339, 621, 675, 680, 724
MseI	TTAA	6 cut(s)	30, 92, 281, 323, 711, 723
MspCI	CTTAAG	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	12, 549
NlaIII	CATG	5 cut(s)	118, 133, 164, 358, 475
NlaIV	GGNNCC	2 cut(s)	504, 637
PshBI	ATTAAT	1 cut(s)	723
PspN4I	GGNNCC	2 cut(s)	504, 637
PspPI	GGNCC	2 cut(s)	358, 503
PstI	CTGCAG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	82, 217
RsaNI	GTAC	2 cut(s)	81, 216
SaqAI	TTAA	6 cut(s)	30, 92, 281, 323, 711, 723
Sau3AI	GATC	2 cut(s)	12, 549
Sau96I	GGNCC	2 cut(s)	358, 503
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	9 cut(s)	36, 79, 113, 295, 309, 373, 431, 437, 675
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	322, 430
SmoI	CTYRAG	2 cut(s)	322, 430
Sse9I	AATT	6 cut(s)	84, 339, 621, 675, 680, 724
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	262, 548
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	84, 339, 621, 675, 680, 724
TatI	WGTACW	2 cut(s)	80, 215
Tru1I	TTAA	6 cut(s)	30, 92, 281, 323, 711, 723
Tru9I	TTAA	6 cut(s)	30, 92, 281, 323, 711, 723
TscAI	CASTG	2 cut(s)	63, 212
TspDTI	ATGAA	3 cut(s)	166, 531, 717
TspRI	CASTG	2 cut(s)	63, 212
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	503
VspI	ATTAAT	1 cut(s)	723
XapI	RAATTY	1 cut(s)	621
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.