Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

62757423 .. 62759347

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTGCCGTTTTCGGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCTCCATGACAGAATATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGATCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAAAAATACAAGTGCTACACAACAACCACTCTTCTCCTTCGGTCTCTTTGTTCGATGCTTCCTCTTGGGTTTAACAGGGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCATCCTCAGGAGGACAAAGACAGATTGGAGAAGCTCAAGCTTCCAAGCCAAAGTAGTTGGCACTATAATATCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATACATAAGACCATCTTCAGTTTTGTCCTCGTCTTCATACTCGGTCTTATTTCAGAAAGCAGGACAATATTTGGTCTTCTCCTCACCAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGATAGGAACTATGAAACTATATCCGGAAGTGGAAGTAATGGAAGTGGTATCATATTATAGCTTGCTTGGGACTATCCAATGTGTTATATTCTCTTTATTCATAGAAAGAAGCCTAAGTGTTTGGAAATTAAAGCTCAACATGGATCTCCTTCTCATTGTTTTAACAGCATGTTTTGGGGGTCTAGTTCGAAGCCGGGTTCACAACTGGTGCATAAACATGAAGGGGACACATTATGTGCCAATGTTCAAACCATTTGGCATTGTTTTCGCCACCATTTTCGGTGTCAGCTTATCGGCTAATAATCTTCATTATGGAAGTGTGTTAGGAGCAGTGGTGACCGGAGTAGGGTACTTTACTATAATGTGGGGGCAGATCAAAGAAGATGAAGATGAACAATGTGTTAATCATAATGATCAGAGCCATCTGGAATCTGCAAATTCTGAAGCCAAGGTCCCTCTCTTGGAAGAAGAAATCGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

370

Amino Acids

40.96

Weight (kDa)

6.7

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	652
AclWI	GGATC	1 cut(s)	780
AcsI	RAATTY	2 cut(s)	579, 1066
AcuI	CTGAAG	2 cut(s)	465, 1092
AfaI	GTAC	2 cut(s)	40, 980
AfiI	CCNNNNNNNGG	2 cut(s)	975, 1090
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	449, 877
AluBI	AGCT	6 cut(s)	251, 387, 393, 690, 763, 918
AluI	AGCT	6 cut(s)	251, 387, 393, 690, 763, 918
Alw26I	GTCTC	2 cut(s)	215, 613
AlwI	GGATC	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	579, 1066
AspS9I	GGNCC	3 cut(s)	316, 461, 1081
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	3 cut(s)	28, 540, 976
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	461, 1081
AxyI	CCTNAGG	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	489, 532
BccI	CCATC	3 cut(s)	13, 484, 1059
BcgI	CGANNNNNNTGC	2 cut(s)	877, 911
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	1 cut(s)	824
BcoDI	GTCTC	2 cut(s)	215, 613
BfaI	CTAG	2 cut(s)	302, 812
BfrI	CTTAAG	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	2 cut(s)	461, 1081
BmgT120I	GGNCC	3 cut(s)	316, 461, 1081
BmiI	GGNNCC	3 cut(s)	462, 595, 1083
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	489, 532
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	824
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	312, 1077
BsaWI	WCCGGW	2 cut(s)	652, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	975, 1090
Bse1I	ACTGG	1 cut(s)	839
Bse21I	CCTNAGG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	312, 1077
BseGI	GGATG	2 cut(s)	135, 354
BseLI	CCNNNNNNNGG	2 cut(s)	975, 1090
BseMII	CTCAG	2 cut(s)	373, 624
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	2 cut(s)	131, 535
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	653, 823, 969
BslFI	GGGAC	3 cut(s)	712, 868, 1067
BslI	CCNNNNNNNGG	2 cut(s)	975, 1090
BsmAI	GTCTC	2 cut(s)	215, 613
BsmFI	GGGAC	3 cut(s)	712, 868, 1067
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	132, 772, 1002, 1042
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	372, 623
BspEI	TCCGGA	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	462, 595, 1083
BspPI	GGATC	1 cut(s)	780
BspT104I	TTCGAA	1 cut(s)	817
BspTI	CTTAAG	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	2 cut(s)	312, 1077
BssMI	GATC	4 cut(s)	132, 772, 1002, 1042
BssT1I	CCWWGG	2 cut(s)	312, 1077
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	3 cut(s)	359, 610, 743
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	964
BstF5I	GGATG	2 cut(s)	135, 354
BstKTI	GATC	4 cut(s)	135, 775, 1005, 1045
BstMAI	GTCTC	2 cut(s)	215, 613
BstMBI	GATC	4 cut(s)	132, 772, 1002, 1042
BstNSI	RCATGY	1 cut(s)	801
BstPI	GGTNACC	1 cut(s)	964
BstSCI	CCNGG	1 cut(s)	822
BstV2I	GAAGAC	2 cut(s)	489, 532
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	135, 354
BtsI	GCAGTG	2 cut(s)	163, 966
BtsIMutI	CAGTG	2 cut(s)	163, 966
Cac8I	GCNNGC	1 cut(s)	692
Cfr13I	GGNCC	3 cut(s)	316, 461, 1081
Csp6I	GTAC	2 cut(s)	39, 979
CviAII	CATG	8 cut(s)	73, 88, 119, 313, 430, 769, 798, 847
CviQI	GTAC	2 cut(s)	39, 979
DdeI	CTNAG	3 cut(s)	359, 610, 743
DpnI	GATC	4 cut(s)	134, 774, 1004, 1044
DpnII	GATC	4 cut(s)	132, 772, 1002, 1042
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	312, 1077
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	461, 1081
Eco57I	CTGAAG	2 cut(s)	465, 1092
Eco81I	CCTNAGG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	964
EcoO109I	RGGNCCY	1 cut(s)	1081
EcoO65I	GGTNACC	1 cut(s)	964
EcoT14I	CCWWGG	2 cut(s)	312, 1077
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	312, 1077
FaeI	CATG	8 cut(s)	76, 91, 122, 316, 433, 772, 801, 850
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	3 cut(s)	712, 868, 1067
FatI	CATG	8 cut(s)	72, 87, 118, 312, 429, 768, 797, 846
FbaI	TGATCA	1 cut(s)	1042
FokI	GGATG	2 cut(s)	122, 341
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	302, 812
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	3 cut(s)	653, 823, 969
Hin1II	CATG	8 cut(s)	76, 91, 122, 316, 433, 772, 801, 850
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	1058
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	3 cut(s)	653, 823, 969
HphI	GGTGA	3 cut(s)	28, 540, 976
Hpy166II	GTNNAC	2 cut(s)	51, 829
Hpy188I	TCNGA	4 cut(s)	519, 630, 1047, 1072
Hpy188III	TCNNGA	3 cut(s)	361, 653, 1055
Hpy8I	GTNNAC	2 cut(s)	51, 829
HpyAV	CCTTC	5 cut(s)	26, 214, 349, 788, 844
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	168, 269, 840, 1064
HpyF3I	CTNAG	3 cut(s)	359, 610, 743
Hsp92II	CATG	8 cut(s)	76, 91, 122, 316, 433, 772, 801, 850
Kpn2I	TCCGGA	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	1042
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	132, 772, 1002, 1042
LmnI	GCTCC	2 cut(s)	593, 956
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	302, 812
MaeIII	GTNAC	2 cut(s)	284, 964
MalI	GATC	4 cut(s)	134, 774, 1004, 1044
MboI	GATC	4 cut(s)	132, 772, 1002, 1042
MboII	GAAGA	9 cut(s)	190, 471, 489, 532, 926, 1022, 1028, 1106, 1109
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	5 cut(s)	42, 297, 579, 755, 1066
MroI	TCCGGA	1 cut(s)	652
MseI	TTAA	6 cut(s)	50, 239, 281, 758, 791, 1032
MslI	CAYNNNNRTG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	3 cut(s)	653, 823, 969
MspR9I	CCNGG	1 cut(s)	824
NciI	CCSGG	1 cut(s)	824
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	132, 772, 1002, 1042
NlaIII	CATG	8 cut(s)	76, 91, 122, 316, 433, 772, 801, 850
NlaIV	GGNNCC	3 cut(s)	462, 595, 1083
NmuCI	GTSAC	1 cut(s)	964
NspI	RCATGY	1 cut(s)	801
NspV	TTCGAA	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	1058
PpuMI	RGGWCCY	1 cut(s)	1081
Psp5II	RGGWCCY	1 cut(s)	1081
PspEI	GGTNACC	1 cut(s)	964
PspN4I	GGNNCC	3 cut(s)	462, 595, 1083
PspPI	GGNCC	3 cut(s)	316, 461, 1081
PspPPI	RGGWCCY	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	2 cut(s)	40, 980
RsaNI	GTAC	2 cut(s)	39, 979
RseI	CAYNNNNRTG	1 cut(s)	845
SaqAI	TTAA	6 cut(s)	50, 239, 281, 758, 791, 1032
Sau3AI	GATC	4 cut(s)	132, 772, 1002, 1042
Sau96I	GGNCC	3 cut(s)	316, 461, 1081
ScrFI	CCNGG	1 cut(s)	824
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	2 cut(s)	461, 1081
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	2 cut(s)	280, 388
SmoI	CTYRAG	2 cut(s)	280, 388
Sse9I	AATT	5 cut(s)	42, 297, 579, 755, 1066
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	302, 812
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	2 cut(s)	312, 1077
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	131, 220, 817
TaqII	GACCGA	2 cut(s)	197, 496
TasI	AATT	5 cut(s)	42, 297, 579, 755, 1066
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	1058
Tru1I	TTAA	6 cut(s)	50, 239, 281, 758, 791, 1032
Tru9I	TTAA	6 cut(s)	50, 239, 281, 758, 791, 1032
TscAI	CASTG	2 cut(s)	170, 966
TseFI	GTSAC	1 cut(s)	964
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	7 cut(s)	489, 656, 718, 863, 926, 1029, 1035
TspRI	CASTG	2 cut(s)	170, 966
Vha464I	CTTAAG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	461, 1081
XapI	RAATTY	2 cut(s)	579, 1066
XceI	RCATGY	1 cut(s)	801
XspI	CTAG	2 cut(s)	302, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.