Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002841.1

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Reverse (-)

76067 .. 77113

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002841.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgggggcaatagtagttgaactctacaagggtccatacgtaagaccatcttcagttttgtcctcgtcttcatactcggtcttatttcagaaagcaggacaatatttggtcttctcctcaccagcaacagaacattgggttcttggtggaattttattggcaggagcctctatatctgtctcagtatggaacatcattcagataggaactatgaaactatatccggaagtggaagtaatggaagtggtatcatattatagcttgcttgggactatccaatgtgttatattctctttattcatagaaagaagcctaagcgcttggaaattaaagctcaacatggatctccttctcattgttttaacagcatgttttgggggtctagttcgaagccgggttcacaactggtgcataaacatgaaggggacacattatgtgccaatgttcaaaccatttggcattgttttcgccaccattttcggtgtcagcttatcggctaataatcttcattatggaagtgtgttaggagcagtggtgaccggagtagggtactttactataatgtgggggcagatcaaagaagatgaagatgagcaatgtgttaatcataatgatcagagccatctggaatctacaaattctgaagccaaggtccctctcttggaagaagaaatcggtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

227

Amino Acids

25.04

Weight (kDa)

5.65

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	150, 637
AcuI	CTGAAG	2 cut(s)	36, 663
AfaI	GTAC	1 cut(s)	551
AfeI	AGCGCT	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	546, 661
AgsI	TTSAA	2 cut(s)	20, 448
AluBI	AGCT	3 cut(s)	261, 334, 489
AluI	AGCT	3 cut(s)	261, 334, 489
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	351
Aor13HI	TCCGGA	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	150, 637
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	32, 652
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	111, 547
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	32, 652
BbsI	GAAGAC	2 cut(s)	60, 103
BccI	CCATC	2 cut(s)	55, 630
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	2 cut(s)	32, 652
BmgT120I	GGNCC	2 cut(s)	32, 652
BmiI	GGNNCC	3 cut(s)	33, 166, 654
BmrFI	CCNGG	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	60, 103
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	2 cut(s)	223, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 661
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	602
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	546, 661
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	224, 394, 540
BslFI	GGGAC	3 cut(s)	283, 439, 638
BslI	CCNNNNNNNGG	2 cut(s)	546, 661
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	283, 439, 638
Bsp119I	TTCGAA	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	343, 573, 613
BspCNI	CTCAG	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	33, 166, 654
BspPI	GGATC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	343, 573, 613
BssT1I	CCWWGG	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	181, 314
BstEII	GGTNACC	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	346, 576, 616
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	343, 573, 613
BstNSI	RCATGY	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	393
BstSNI	TACGTA	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	60, 103
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	32, 652
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	3 cut(s)	340, 369, 418
CviJI	RGCY	9 cut(s)	167, 261, 312, 334, 393, 489, 497, 621, 647
CviKI_1	RGCY	9 cut(s)	167, 261, 312, 334, 393, 489, 497, 621, 647
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	181, 314
DpnI	GATC	3 cut(s)	345, 575, 615
DpnII	GATC	3 cut(s)	343, 573, 613
Eco105I	TACGTA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	32, 652
Eco47III	AGCGCT	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	36, 663
Eco91I	GGTNACC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	3 cut(s)	343, 372, 421
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	3 cut(s)	283, 439, 638
FatI	CATG	3 cut(s)	339, 368, 417
FbaI	TGATCA	1 cut(s)	613
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	321
HapII	CCGG	3 cut(s)	224, 394, 540
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	343, 372, 421
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	3 cut(s)	224, 394, 540
HphI	GGTGA	2 cut(s)	111, 547
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	4 cut(s)	90, 201, 618, 643
Hpy188III	TCNNGA	2 cut(s)	224, 626
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	359, 415
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	411
HpyF3I	CTNAG	2 cut(s)	181, 314
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	343, 372, 421
HspAI	GCGC	1 cut(s)	318
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	343, 573, 613
LmnI	GCTCC	2 cut(s)	164, 527
LpnPI	CCDG	8 cut(s)	81, 135, 147, 237, 391, 407, 553, 611
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	345, 575, 615
MboI	GATC	3 cut(s)	343, 573, 613
MboII	GAAGA	8 cut(s)	42, 60, 103, 497, 593, 599, 677, 680
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	3 cut(s)	150, 326, 637
MnlI	CCTC	4 cut(s)	73, 127, 178, 666
MroI	TCCGGA	1 cut(s)	223
MseI	TTAA	3 cut(s)	329, 362, 603
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	3 cut(s)	224, 394, 540
MspR9I	CCNGG	1 cut(s)	395
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	343, 573, 613
NlaIII	CATG	3 cut(s)	343, 372, 421
NlaIV	GGNNCC	3 cut(s)	33, 166, 654
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	1 cut(s)	372
NspV	TTCGAA	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	629
Ppu21I	YACGTR	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
PspEI	GGTNACC	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	33, 166, 654
PspPI	GGNCC	2 cut(s)	32, 652
PspPPI	RGGWCCY	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	329, 362, 603
Sau3AI	GATC	3 cut(s)	343, 573, 613
Sau96I	GGNCC	2 cut(s)	32, 652
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	5 cut(s)	42, 263, 336, 491, 654
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	2 cut(s)	32, 652
SmiMI	CAYNNNNRTG	1 cut(s)	416
SnaBI	TACGTA	1 cut(s)	40
Sse9I	AATT	3 cut(s)	150, 326, 637
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	648
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	388
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	150, 326, 637
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	3 cut(s)	329, 362, 603
Tru9I	TTAA	3 cut(s)	329, 362, 603
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	6 cut(s)	60, 227, 289, 434, 497, 600
TspRI	CASTG	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	32, 652
XapI	RAATTY	2 cut(s)	150, 637
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.