Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Forward (+)

65111581 .. 65113750

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATGGGGATCATTATGAGAAGTGTTAAGCTTGTAGAAATGTTGCCGTTTTCGGTGATGGTGGTTATGGAAGGTTGTACAATTTTGTTAACAATCTGGGCTAAAACCTCCATGACAGAATATGACATGAGCCCTTTTGTGTTTGTTGTCTATACTCATGTTCTATCCTCGATCATCCTCCTCCTATATTCTTTCGTCTTTCACTGCAAGATAGCTGTATCTCAAAACCTTGCATTTCTTGGCTTAAGTTACAGTTCTCCAATTCTAGTGTGTGCCATGGGCCTAATGCTACCTACTTTTTCCTTCTTGCTCTCTATCATCCTCAGGAGGACAAAGACAGATTGGAGAAGCTCAAGCTTCCAAGCCAAAGTAGTTGGCACTATAATATCAATCATGGGGGCAATAGTAGTTGAACTCTACAAGGGTCCATACATAAGACCATCTTCAGTTTTGTCCTCGTCTTCATACTCGGTCTTATTTCAGAAAGCAGGACAATATTTGGTCTTCTCCTCACCAGCAACAGAACATTGGGTTCTTGGTGGAATTTTATTGGCAGGAGCCTCTATATCTGTCTCAGTATGGAACATCATTCAGATAGGAACTATGAAACTATATCCGGAAGTGGAAGTAATGGAAGTGGTATCATATTATAGCTTGCTTGGGACTATCCAATGTGTTATATTCTCTTTATTCATAGAAAGAAGCCTAAGTGTTTGGAAATTAAAGCTCAACATGGATCTCCTTCTCATTGTTTTAACAGCATGTTTTGGGGGTCTAGTTCGAAGCCGGGTTCACAACTGGTGCATAAACATGAAGGGGACACATTATGTGCCAATGTTCAAACCATTTGGCATTGTTTTCGCCACCATTTTCGGTGTCAGCTTATCGGCTAATAATCTTCATTATGGAAGTGTGTTAGGAGCAGTGGTGACCGGAGTAGGGTACTTTACTATAATGTGGGGGCAGATCAAAGAAGATGAAGATGAACAATGTGTTAATCATAATGATCAGAGCCATCTGGAATCTGCAAATTCTGAAGCCAAGGTCCCTCTCTTGGAAGAAGAAATCGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

358

Amino Acids

39.75

Weight (kDa)

6.7

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	616
AclWI	GGATC	2 cut(s)	17, 744
AcsI	RAATTY	2 cut(s)	543, 1030
AcuI	CTGAAG	2 cut(s)	429, 1056
AfaI	GTAC	2 cut(s)	79, 944
AfiI	CCNNNNNNNGG	2 cut(s)	939, 1054
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	413, 841
AluBI	AGCT	7 cut(s)	31, 215, 351, 357, 654, 727, 882
AluI	AGCT	7 cut(s)	31, 215, 351, 357, 654, 727, 882
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	2 cut(s)	17, 744
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	543, 1030
AspS9I	GGNCC	3 cut(s)	280, 425, 1045
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	3 cut(s)	67, 504, 940
AsuII	TTCGAA	1 cut(s)	781
AvaII	GGWCC	2 cut(s)	425, 1045
AxyI	CCTNAGG	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	2 cut(s)	453, 496
BccI	CCATC	3 cut(s)	52, 448, 1023
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	841, 875
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	266, 776
BfrI	CTTAAG	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	788
Bme18I	GGWCC	2 cut(s)	425, 1045
BmgT120I	GGNCC	3 cut(s)	280, 425, 1045
BmiI	GGNNCC	3 cut(s)	426, 559, 1047
BmrFI	CCNGG	1 cut(s)	788
BpiI	GAAGAC	2 cut(s)	453, 496
Bpu14I	TTCGAA	1 cut(s)	781
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	276, 1041
BsaWI	WCCGGW	2 cut(s)	616, 932
BsaXI	ACNNNNNCTCC	2 cut(s)	912, 942
Bsc4I	CCNNNNNNNGG	2 cut(s)	939, 1054
Bse1I	ACTGG	1 cut(s)	803
Bse21I	CCTNAGG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	616
BseDI	CCNNGG	2 cut(s)	276, 1041
BseGI	GGATG	2 cut(s)	174, 318
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	939, 1054
BseMII	CTCAG	2 cut(s)	337, 588
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	2 cut(s)	170, 499
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	617, 787, 933
BslFI	GGGAC	3 cut(s)	676, 832, 1031
BslI	CCNNNNNNNGG	2 cut(s)	939, 1054
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	3 cut(s)	676, 832, 1031
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp13I	TCCGGA	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	9, 171, 736, 966, 1006
Bsp19I	CCATGG	1 cut(s)	276
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	336, 587
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	3 cut(s)	426, 559, 1047
BspPI	GGATC	2 cut(s)	17, 744
BspT104I	TTCGAA	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	276, 1041
BssMI	GATC	5 cut(s)	9, 171, 736, 966, 1006
BssT1I	CCWWGG	2 cut(s)	276, 1041
Bst4CI	ACNGT	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	323, 574, 707
BstDSI	CCRYGG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	928
BstF5I	GGATG	2 cut(s)	174, 318
BstKTI	GATC	5 cut(s)	12, 174, 739, 969, 1009
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	5 cut(s)	9, 171, 736, 966, 1006
BstNSI	RCATGY	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	1 cut(s)	786
BstV2I	GAAGAC	2 cut(s)	453, 496
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	174, 318
BtsI	GCAGTG	2 cut(s)	202, 930
BtsIMutI	CAGTG	2 cut(s)	202, 930
Cac8I	GCNNGC	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	280, 425, 1045
Csp6I	GTAC	2 cut(s)	78, 943
CviAII	CATG	8 cut(s)	112, 127, 158, 277, 394, 733, 762, 811
CviQI	GTAC	2 cut(s)	78, 943
DdeI	CTNAG	3 cut(s)	323, 574, 707
DpnI	GATC	5 cut(s)	11, 173, 738, 968, 1008
DpnII	GATC	5 cut(s)	9, 171, 736, 966, 1006
Eco130I	CCWWGG	2 cut(s)	276, 1041
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	425, 1045
Eco57I	CTGAAG	2 cut(s)	429, 1056
Eco81I	CCTNAGG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	928
EcoT14I	CCWWGG	2 cut(s)	276, 1041
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	2 cut(s)	276, 1041
FaeI	CATG	8 cut(s)	115, 130, 161, 280, 397, 736, 765, 814
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	3 cut(s)	676, 832, 1031
FatI	CATG	8 cut(s)	111, 126, 157, 276, 393, 732, 761, 810
FbaI	TGATCA	1 cut(s)	1006
FokI	GGATG	2 cut(s)	161, 305
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	2 cut(s)	266, 776
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	3 cut(s)	617, 787, 933
Hin1II	CATG	8 cut(s)	115, 130, 161, 280, 397, 736, 765, 814
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	2 cut(s)	29, 355
HinfI	GANTC	1 cut(s)	1022
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	3 cut(s)	617, 787, 933
HphI	GGTGA	3 cut(s)	67, 504, 940
Hpy166II	GTNNAC	2 cut(s)	90, 793
Hpy188I	TCNGA	4 cut(s)	483, 594, 1011, 1036
Hpy188III	TCNNGA	3 cut(s)	325, 617, 1019
Hpy8I	GTNNAC	2 cut(s)	90, 793
HpyAV	CCTTC	4 cut(s)	65, 313, 752, 808
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	207, 233, 804, 1028
HpyF3I	CTNAG	3 cut(s)	323, 574, 707
Hsp92II	CATG	8 cut(s)	115, 130, 161, 280, 397, 736, 765, 814
Kpn2I	TCCGGA	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	1006
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	9, 171, 736, 966, 1006
LmnI	GCTCC	2 cut(s)	557, 920
MaeI	CTAG	2 cut(s)	266, 776
MaeIII	GTNAC	2 cut(s)	248, 928
MalI	GATC	5 cut(s)	11, 173, 738, 968, 1008
MboI	GATC	5 cut(s)	9, 171, 736, 966, 1006
MboII	GAAGA	8 cut(s)	435, 453, 496, 890, 986, 992, 1070, 1073
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	5 cut(s)	81, 261, 543, 719, 1030
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	6 cut(s)	27, 89, 245, 722, 755, 996
MslI	CAYNNNNRTG	1 cut(s)	809
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	3 cut(s)	617, 787, 933
MspR9I	CCNGG	1 cut(s)	788
NciI	CCSGG	1 cut(s)	788
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	5 cut(s)	9, 171, 736, 966, 1006
NlaIII	CATG	8 cut(s)	115, 130, 161, 280, 397, 736, 765, 814
NlaIV	GGNNCC	3 cut(s)	426, 559, 1047
NmuCI	GTSAC	1 cut(s)	928
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	1022
PpuMI	RGGWCCY	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	1045
PspEI	GGTNACC	1 cut(s)	928
PspN4I	GGNNCC	3 cut(s)	426, 559, 1047
PspPI	GGNCC	3 cut(s)	280, 425, 1045
PspPPI	RGGWCCY	1 cut(s)	1045
PsuI	RGATCY	1 cut(s)	736
RsaI	GTAC	2 cut(s)	79, 944
RsaNI	GTAC	2 cut(s)	78, 943
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	6 cut(s)	27, 89, 245, 722, 755, 996
Sau3AI	GATC	5 cut(s)	9, 171, 736, 966, 1006
Sau96I	GGNCC	3 cut(s)	280, 425, 1045
ScrFI	CCNGG	1 cut(s)	788
SduI	GDGCHC	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	781
SinI	GGWCC	2 cut(s)	425, 1045
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	244, 352
SmoI	CTYRAG	2 cut(s)	244, 352
Sse9I	AATT	5 cut(s)	81, 261, 543, 719, 1030
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	2 cut(s)	266, 776
StyD4I	CCNGG	1 cut(s)	786
StyI	CCWWGG	2 cut(s)	276, 1041
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	170, 781
TaqII	GACCGA	1 cut(s)	460
TasI	AATT	5 cut(s)	81, 261, 543, 719, 1030
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	1022
Tru1I	TTAA	6 cut(s)	27, 89, 245, 722, 755, 996
Tru9I	TTAA	6 cut(s)	27, 89, 245, 722, 755, 996
TscAI	CASTG	2 cut(s)	209, 930
TseFI	GTSAC	1 cut(s)	928
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	7 cut(s)	453, 620, 682, 827, 890, 993, 999
TspRI	CASTG	2 cut(s)	209, 930
Vha464I	CTTAAG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	425, 1045
XapI	RAATTY	2 cut(s)	543, 1030
XceI	RCATGY	1 cut(s)	765
XspI	CTAG	2 cut(s)	266, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.