Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013445

Physical Location & Seq

Genomic Coordinates Reverse (-)

8853534 .. 8855874

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCCTAAATCAAAGCGAGATAGACCAGTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGTGAATGGAATTAGGGAGGCTGTTGAAAAATATTCCTCTGTCTATGTTTTCTCTTTTGAAAACATGAGAAATATCAAATTCAAGGAGTTTAGGCAGCAGTTTAGGCACAATGGAAAGTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCAGTAGAAACGGTTGAACTGAAGGAAGGTCCTCTAGAACAGTTCACACATGAGATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAGGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGATGGAGCCCTAGTGACTTTGAGCTTTACAGAGAAGATCTGTCAGAGCTTTACCGAGAAGATCTCTCAGACGTTGAAACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

235

Amino Acids

27.24

Weight (kDa)

8.31

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	19 - 120	3e-21	Ribosomal protein L10
RL10P_insert	PF17777	127 - 194	7.9e-21	Insertion domain in 60S ribosomal protein L10P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25260
fragaria_vesca	FvH4_5g30060 FvH4_5g30060
malus_domestica	MD08G1225200.v1.1 MD15G1418800.v1.1
prunus_persica	Prupe.1G562900_v2.0.a1
pyrus_communis	pycom08g19650 pycom15g37180
rosa_chinensis	RchiOBHm_Chr7g0224251
rosa_laevigata	RLG00000001910
rosa_multiflora	Rmu_sc0008008.1_g000008
rosa_roxburghii	Rroxscaffold_3G00235010
rosa_rugosa	Rorug07G0221700
rosa_samantha	Rh7AG366700 Rh7BG357700 Rh7CG385200 Rh7DG360600
rosa_wichuraiana	Rw7G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	483, 499
AgsI	TTSAA	8 cut(s)	104, 137, 160, 378, 410, 473, 604, 698
AluBI	AGCT	6 cut(s)	286, 345, 469, 607, 646, 670
AluI	AGCT	6 cut(s)	286, 345, 469, 607, 646, 670
Alw26I	GTCTC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	172, 286
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	456
AspA2I	CCTAGG	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	381, 422
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	381, 422
AvrII	CCTAGG	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	184, 273
BccI	CCATC	3 cut(s)	442, 586, 618
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	3 cut(s)	203, 428, 633
BfmI	CTRYAG	2 cut(s)	243, 619
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	2 cut(s)	658, 682
BisI	GCNGC	2 cut(s)	173, 287
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	2 cut(s)	174, 288
Bme18I	GGWCC	2 cut(s)	381, 422
BmgT120I	GGNCC	2 cut(s)	381, 422
BmiI	GGNNCC	2 cut(s)	453, 629
BmsI	GCATC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu14I	TTCGAA	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 619, 649
Bse1I	ACTGG	2 cut(s)	26, 307
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	2 cut(s)	26, 307
BseXI	GCAGC	2 cut(s)	184, 273
BsiSI	CCGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	658, 682
BspCNI	CTCAG	1 cut(s)	701
BspLI	GGNNCC	2 cut(s)	453, 629
BspMAI	CTGCAG	2 cut(s)	247, 623
BspMI	ACCTGC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	26, 307
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	658, 682
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	406, 435, 502
Bst6I	CTCTTC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	39, 688, 705
BstKTI	GATC	2 cut(s)	661, 685
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	658, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 475, 580, 613, 627
BstSFI	CTRYAG	2 cut(s)	243, 619
BstV1I	GCAGC	2 cut(s)	184, 273
BstX2I	RGATCY	2 cut(s)	658, 682
BstYI	RGATCY	2 cut(s)	658, 682
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	381, 422
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	482, 498
CviAII	CATG	2 cut(s)	142, 443
CviQI	GTAC	2 cut(s)	482, 498
DdeI	CTNAG	3 cut(s)	39, 688, 705
DpnI	GATC	2 cut(s)	660, 684
DpnII	GATC	2 cut(s)	658, 682
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	381, 422
Eco57I	CTGAAG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	145, 446
FaiI	YATR	6 cut(s)	66, 123, 143, 323, 360, 444
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	2 cut(s)	141, 442
Fnu4HI	GCNGC	2 cut(s)	173, 287
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	2 cut(s)	173, 287
FspBI	CTAG	3 cut(s)	203, 428, 633
GluI	GCNGC	2 cut(s)	173, 287
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	145, 446
HindIII	AAGCTT	2 cut(s)	343, 467
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	4 cut(s)	370, 465, 667, 691
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	3 cut(s)	409, 413, 530
HpyCH4III	ACNGT	3 cut(s)	406, 435, 502
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	4 cut(s)	223, 245, 395, 621
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 475, 580, 613, 627
HpyF3I	CTNAG	3 cut(s)	39, 688, 705
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	2 cut(s)	145, 446
Kzo9I	GATC	2 cut(s)	658, 682
LmnI	GCTCC	1 cut(s)	627
LpnPI	CCDG	6 cut(s)	39, 209, 249, 288, 397, 492
Lsp1109I	GCAGC	2 cut(s)	184, 273
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	3 cut(s)	203, 428, 633
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	3 cut(s)	28, 313, 635
MalI	GATC	2 cut(s)	660, 684
MboI	GATC	2 cut(s)	658, 682
MflI	RGATCY	2 cut(s)	658, 682
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	2 cut(s)	87, 155
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	88, 124, 355, 435
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	351
MspI	CCGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	181, 475, 580, 613, 627
NdeII	GATC	2 cut(s)	658, 682
NlaIII	CATG	2 cut(s)	145, 446
NlaIV	GGNNCC	2 cut(s)	453, 629
NmuCI	GTSAC	2 cut(s)	28, 635
NspV	TTCGAA	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	174, 288
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	453, 629
PspPI	GGNCC	2 cut(s)	381, 422
PspPPI	RGGWCCY	1 cut(s)	422
PstI	CTGCAG	2 cut(s)	247, 623
PsuI	RGATCY	2 cut(s)	658, 682
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	483, 499
RsaNI	GTAC	2 cut(s)	482, 498
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	173, 287
Sau3AI	GATC	2 cut(s)	658, 682
Sau96I	GGNCC	2 cut(s)	381, 422
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	243, 619
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	2 cut(s)	381, 422
Sse9I	AATT	2 cut(s)	87, 155
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	3 cut(s)	203, 428, 633
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	406, 435, 502
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	209, 339
TasI	AATT	2 cut(s)	87, 155
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	28, 635
TseI	GCWGC	2 cut(s)	172, 286
Tsp45I	GTSAC	2 cut(s)	28, 635
TspDTI	ATGAA	2 cut(s)	267, 602
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	381, 422
XapI	RAATTY	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	427
XmaJI	CCTAGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	3 cut(s)	203, 428, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.