Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013445

Physical Location & Seq

Genomic Coordinates Reverse (-)

45980819 .. 45986174

Gene Structure 5356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G562900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCCAAGTCTAAGCGCGATCGACCAGTTACACTTTCCAAGACAAAGAAGAAAGGAAGGGAACACAAAGAAACCATTGTGAATTCAATAAGGCAGGCAGCGGAAGATTACAGTTCCGTTTATGTGTTCTCTTTTGAGAACATGCGAAATCTCAAATTCAAGGAGTTCAGAGACCAGCTCAAATCAACCAGCAGATTTTTCCTTGGTTCAAACAAAGTCATGCAAATTTCTCTAGGTCGATCTGATTCTGATGAGATCAGACCAGATCTCCACAAAATTTCTAAGGTTCTACATGGAAATGCTGGACTATGTTTCACCAATTTGCCAAAGGAAGAGGTGGAAAGGCTATTTAGCGAATACAAGGAATATGATTTTGCAAGGACGGGAAGCATAGCGACAGAGAAGGTGGAGCTTCAAGAGGGTCCTTTGGAGCAGTTCACTCATGAGATGGAACCCTTTCTACGTAAACAAGGGATGCCTGTTCGTTTGAACAAAGGTGTTGTGGAGCTTGTTTCAGACTTTCTTGTTTGTGATGAAGGAAAGCCTCTGTCACCTGAGTCAGCTCGGATACTGCGTTTGTTGGGAATCAAGATGGCTACCTTCCGACTTCACTTAATAAGCAGATGGAGCCCTGGTGAATTCGAACTCTACGGTCCAGGACCAGATGATTCAGGTGTTGAATCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

8.74

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25260
fragaria_vesca	FvH4_5g30060 FvH4_5g30060
malus_domestica	MD08G1225200.v1.1 MD15G1418800.v1.1
prunus_persica	Prupe.1G562900_v2.0.a1
pyrus_communis	pycom08g19650 pycom15g37180
rosa_chinensis	RchiOBHm_Chr7g0224251
rosa_laevigata	RLG00000001910
rosa_multiflora	Rmu_sc0008008.1_g000008
rosa_roxburghii	Rroxscaffold_3G00235010
rosa_rugosa	Rorug07G0221700
rosa_samantha	Rh7AG366700 Rh7BG357700 Rh7CG385200 Rh7DG360600
rosa_wichuraiana	Rw7G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	101
AcsI	RAATTY	5 cut(s)	82, 155, 225, 276, 638
AgsI	TTSAA	6 cut(s)	87, 160, 210, 416, 490, 680
AjnI	CCWGG	2 cut(s)	631, 655
AluBI	AGCT	4 cut(s)	178, 412, 508, 563
AluI	AGCT	4 cut(s)	178, 412, 508, 563
Alw26I	GTCTC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	5 cut(s)	82, 155, 225, 276, 638
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	422, 653, 659
AsuHPI	GGTGA	3 cut(s)	307, 543, 647
AsuII	TTCGAA	1 cut(s)	642
AvaII	GGWCC	3 cut(s)	422, 653, 659
BanII	GRGCYC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	3 cut(s)	442, 586, 618
BciT130I	CCWGG	2 cut(s)	633, 657
BciVI	GTATCC	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	561
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	633, 657
Bme18I	GGWCC	3 cut(s)	422, 653, 659
BmgT120I	GGNCC	3 cut(s)	422, 653, 659
BmiI	GGNNCC	3 cut(s)	423, 453, 629
BmrFI	CCNGG	2 cut(s)	633, 657
BmsI	GCATC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
Bpu14I	TTCGAA	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	202, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 619, 649
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	633, 657
BseDI	CCNNGG	2 cut(s)	202, 631
BseGI	GGATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	19, 239, 255, 265
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	423, 453, 629
BspT104I	TTCGAA	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	202, 631
BssMI	GATC	4 cut(s)	19, 239, 255, 265
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	633, 657
Bst4CI	ACNGT	2 cut(s)	113, 653
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	12, 282, 555
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	22, 242, 258, 268
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	4 cut(s)	19, 239, 255, 265
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	2 cut(s)	633, 657
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	631, 655
BstSNI	TACGTA	1 cut(s)	464
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	422, 653, 659
CviAII	CATG	4 cut(s)	142, 220, 293, 443
CviJI	RGCY	8 cut(s)	178, 346, 412, 508, 544, 563, 596, 630
CviKI_1	RGCY	8 cut(s)	178, 346, 412, 508, 544, 563, 596, 630
DdeI	CTNAG	3 cut(s)	12, 282, 555
DpnI	GATC	4 cut(s)	21, 241, 257, 267
DpnII	GATC	4 cut(s)	19, 239, 255, 265
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	422, 653, 659
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	2 cut(s)	82, 638
EcoRII	CCWGG	2 cut(s)	631, 655
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	145, 223, 296, 446
FaiI	YATR	9 cut(s)	123, 143, 221, 294, 310, 369, 392, 444, 688
FatI	CATG	4 cut(s)	141, 219, 292, 442
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	145, 223, 296, 446
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	5 cut(s)	245, 557, 585, 668, 680
HphI	GGTGA	3 cut(s)	307, 543, 647
Hpy166II	GTNNAC	2 cut(s)	438, 467
Hpy188I	TCNGA	7 cut(s)	170, 244, 250, 260, 517, 567, 605
Hpy188III	TCNNGA	3 cut(s)	416, 443, 589
Hpy8I	GTNNAC	2 cut(s)	438, 467
HpyAV	CCTTC	4 cut(s)	51, 397, 530, 610
HpyCH4III	ACNGT	2 cut(s)	113, 653
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	223, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	3 cut(s)	12, 282, 555
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	145, 223, 296, 446
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	19, 239, 255, 265
LmnI	GCTCC	4 cut(s)	409, 430, 505, 627
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	28, 549
MalI	GATC	4 cut(s)	21, 241, 257, 267
MboI	GATC	4 cut(s)	19, 239, 255, 265
MboII	GAAGA	3 cut(s)	61, 116, 344
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	6 cut(s)	82, 155, 225, 276, 319, 638
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	3 cut(s)	328, 412, 555
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	633, 657
MvaI	CCWGG	2 cut(s)	633, 657
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeII	GATC	4 cut(s)	19, 239, 255, 265
NlaIII	CATG	4 cut(s)	145, 223, 296, 446
NlaIV	GGNNCC	3 cut(s)	423, 453, 629
NmuCI	GTSAC	1 cut(s)	549
NspI	RCATGY	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	642
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	245, 585, 668, 680
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	1 cut(s)	100
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	631, 655
PspGI	CCWGG	2 cut(s)	631, 655
PspN4I	GGNNCC	3 cut(s)	423, 453, 629
PspPI	GGNCC	3 cut(s)	422, 653, 659
PspPPI	RGGWCCY	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	444, 476
PsuI	RGATCY	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	19, 239, 255, 265
Sau96I	GGNCC	3 cut(s)	422, 653, 659
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	633, 657
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	642
SinI	GGWCC	3 cut(s)	422, 653, 659
SmiMI	CAYNNNNRTG	1 cut(s)	297
SnaBI	TACGTA	1 cut(s)	464
Sse9I	AATT	6 cut(s)	82, 155, 225, 276, 319, 638
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	631, 655
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	113, 653
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	22, 238, 642
TasI	AATT	6 cut(s)	82, 155, 225, 276, 319, 638
TfiI	GAWTC	4 cut(s)	245, 585, 668, 680
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	3 cut(s)	422, 653, 659
XapI	RAATTY	5 cut(s)	82, 155, 225, 276, 638
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.