Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013445

Physical Location & Seq

Genomic Coordinates Reverse (-)

19648270 .. 19651340

Gene Structure 3071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19650.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCTAAGTCTAAGCGCGATCGACAAGTTACATTATCCAAGACAAAGAAGAAGGGAAGGGAACATAAAGAAACAATAGTAAATACGATTCGGCAGGCAGCGGAAGATTACAGTTCTGCTTATGTGTTCTCTTTTGAGAATATGCGGAATCATAAATTCAAGGAGTTCAGAGAGCAGCTCAAATCAAACAGCAGGTTTTTCCTTGGCTCAAACAAAGTCATGCAAATTGCCTTAGGTCGGTCTGAATCCGATGAGATTAGAATGGGCCTCCACAAAATCTCTAAGGTTCTACATGGAGATGCTGGTCTATGTTTTACCAATTTGCCCAAGGAAGAGGTTGAAAGGTTATTCAATGAATATGAGGAATATGACTTTGCAAGGACAGGAAGCATTTCGACAGAAAAGGTGGAGCTCAAGGAGGGTCCCTTGGAGCAATTCAGTCATGAGATGGAGCCCTTCCTTAGAAAACAAGGGATGCCTGTTCGATTAAACAAAGGTGTCATAGAGCTTGTTTCAGACTTCCTTGTCTGTGATGAAGGAAAGCCCTTGTCACCTGAGTCAGCTAGGATACTGCGTTTGCTGGGAACCAAGATGGCTAGCTTCCGACTTCACTTGATTTGCAGATGGAGCCCCGGTGATTTTGAACAATATGCTCCAGGACCAGACGATTCAGGTGTCGAATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

230

Amino Acids

26.31

Weight (kDa)

8.34

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25260
fragaria_vesca	FvH4_5g30060 FvH4_5g30060
malus_domestica	MD08G1225200.v1.1 MD15G1418800.v1.1
prunus_persica	Prupe.1G562900_v2.0.a1
pyrus_communis	pycom08g19650 pycom15g37180
rosa_chinensis	RchiOBHm_Chr7g0224251
rosa_laevigata	RLG00000001910
rosa_multiflora	Rmu_sc0008008.1_g000008
rosa_roxburghii	Rroxscaffold_3G00235010
rosa_rugosa	Rorug07G0221700
rosa_samantha	Rh7AG366700 Rh7BG357700 Rh7CG385200 Rh7DG360600
rosa_wichuraiana	Rw7G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	183
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	101, 145
AcsI	RAATTY	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	160, 341, 352, 644
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	5 cut(s)	178, 412, 508, 563, 600
AluI	AGCT	5 cut(s)	178, 412, 508, 563, 600
Alw21I	GWGCWC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	98, 175
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	265, 422, 659
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	2 cut(s)	543, 647
AsuNHI	GCTAGC	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	422, 659
AxyI	CCTNAGG	1 cut(s)	232
BanII	GRGCYC	3 cut(s)	414, 456, 632
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	110, 187
BccI	CCATC	3 cut(s)	442, 586, 618
BciT130I	CCWGG	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	633
BfaI	CTAG	2 cut(s)	564, 597
BfuAI	ACCTGC	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	2 cut(s)	99, 176
BlsI	GCNGC	2 cut(s)	100, 177
Bme1390I	CCNGG	2 cut(s)	633, 657
Bme18I	GGWCC	2 cut(s)	422, 659
BmgT120I	GGNCC	3 cut(s)	265, 422, 659
BmiI	GGNNCC	5 cut(s)	423, 424, 453, 586, 629
BmrFI	CCNGG	2 cut(s)	633, 657
BmsI	GCATC	2 cut(s)	289, 465
BmtI	GCTAGC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	202, 327, 426, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	202, 327, 426, 631
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	110, 187
BseYI	CCCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	3 cut(s)	414, 456, 632
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	101, 145
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	5 cut(s)	423, 424, 453, 586, 629
BspMI	ACCTGC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	600
BssECI	CCNNGG	4 cut(s)	202, 327, 426, 631
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	3 cut(s)	202, 327, 426
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	96, 598
BstDEI	CTNAG	6 cut(s)	6, 12, 232, 282, 461, 555
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	631, 655
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	110, 187
Bsu36I	CCTNAGG	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	96, 598
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	265, 422, 659
CviAII	CATG	3 cut(s)	220, 293, 443
DdeI	CTNAG	6 cut(s)	6, 12, 232, 282, 461, 555
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	3 cut(s)	202, 327, 426
Eco24I	GRGCYC	3 cut(s)	414, 456, 632
Eco47I	GGWCC	2 cut(s)	422, 659
Eco53kI	GAGCTC	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	3 cut(s)	202, 327, 426
EcoT38I	GRGCYC	3 cut(s)	414, 456, 632
ErhI	CCWWGG	3 cut(s)	202, 327, 426
FaeI	CATG	3 cut(s)	223, 296, 446
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	219, 292, 442
Fnu4HI	GCNGC	2 cut(s)	99, 176
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	3 cut(s)	414, 456, 632
Fsp4HI	GCNGC	2 cut(s)	99, 176
FspBI	CTAG	2 cut(s)	564, 597
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	99, 176
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	223, 296, 446
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	6 cut(s)	88, 148, 245, 557, 668, 680
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	543, 647
Hpy188I	TCNGA	5 cut(s)	170, 244, 250, 517, 605
Hpy188III	TCNNGA	1 cut(s)	443
HpyAV	CCTTC	4 cut(s)	46, 51, 466, 530
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	223, 377, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	6 cut(s)	6, 12, 232, 282, 461, 555
Hsp92II	CATG	3 cut(s)	223, 296, 446
HspAI	GCGC	1 cut(s)	16
KflI	GGGWCCC	1 cut(s)	422
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	5 cut(s)	409, 430, 451, 627, 658
Lsp1109I	GCAGC	2 cut(s)	110, 187
LweI	GCATC	2 cut(s)	289, 465
MaeI	CTAG	2 cut(s)	564, 597
MaeIII	GTNAC	2 cut(s)	28, 549
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	61, 116, 344
MhlI	GDGCHC	3 cut(s)	414, 456, 632
MluCI	AATT	4 cut(s)	155, 225, 319, 434
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	4 cut(s)	278, 328, 355, 412
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	633, 657
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	627
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	1 cut(s)	19
NheI	GCTAGC	1 cut(s)	596
NlaIII	CATG	3 cut(s)	223, 296, 446
NlaIV	GGNNCC	5 cut(s)	423, 424, 453, 586, 629
NmuCI	GTSAC	1 cut(s)	549
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	88, 148, 245, 668, 680
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	100, 177
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	5 cut(s)	423, 424, 453, 586, 629
PspPI	GGNCC	3 cut(s)	265, 422, 659
PspPPI	RGGWCCY	1 cut(s)	422
PvuI	CGATCG	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	2 cut(s)	99, 176
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	3 cut(s)	265, 422, 659
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	633, 657
SduI	GDGCHC	3 cut(s)	414, 456, 632
SfaNI	GCATC	2 cut(s)	289, 465
SinI	GGWCC	2 cut(s)	422, 659
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	155, 225, 319, 434
SsiI	CCGC	2 cut(s)	101, 145
SspMI	CTAG	2 cut(s)	564, 597
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	631, 655
StyI	CCWWGG	3 cut(s)	202, 327, 426
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	22, 395, 484, 678
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	155, 225, 319, 434
TfiI	GAWTC	5 cut(s)	88, 148, 245, 668, 680
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	2 cut(s)	98, 175
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	2 cut(s)	369, 549
VpaK11BI	GGWCC	2 cut(s)	422, 659
XapI	RAATTY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	2 cut(s)	564, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.