Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013445

Physical Location & Seq

Genomic Coordinates Forward (+)

46239750 .. 46243642

Gene Structure 3893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCGAAGTCTAAGCGCGATAGGCCAGTTACATTGTCCAAGACAAAAAGGAAGGGAAGGGAACACAAAGAAGCTGTAGTGAATACGATCAAACAGGCTGCCGAAGATTACAATTCAGTATATGTGTTTTCTTTTGAGAACATGCGAAATCTCAAATTCAAGGAGTTCAGAGACCAGCTCAAATCAACCAGCAGATTTTTCCTTGGTTCCAACAAAGTCATGCAAATTGCTCTTGGTCGATCTGAATCTGATGAAATCAAAAATGGCCTTCACAAGGTTTCCGAGGTTCTCCATGGAAACGCTGGACTTTGCTTTACCAATTTGCCAAAGGAAGAGGTTGAAAGGTTGTTTAATGAATATGAGGAATATGACTTTGCAAGGACAGGAAGCATTGCAACAGAGAAGGTCGAGCTTCAGGAAGGTCCTTTGGAGCAGTTCAGTCATGAGATGGAGCCATTTCTACGAAAACAAGGGATGCCTGTTCGTTTGAACAAAGGTGTTGTGGAGCTTGTTGCGGACTACGTTGTTTGTGAGGAAGGAAAGCCTTTGTCACCTGAGTCAGCTCGTATACTGCGTTTGTTGGGATCCAAGACAGCTACCTTCCGTCTCCACTTAATTTGCAGATGGAGCCCTGGTGAATTTGAACTCTATGTTCCCGGACCTGGTGATTCAGGTGTAGAATCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

229

Amino Acids

26.09

Weight (kDa)

7.71

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	19 - 120	2.2e-21	Ribosomal protein L10
RL10P_insert	PF17777	126 - 195	1.6e-23	Insertion domain in 60S ribosomal protein L10P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25260
fragaria_vesca	FvH4_5g30060 FvH4_5g30060
malus_domestica	MD08G1225200.v1.1 MD15G1418800.v1.1
prunus_persica	Prupe.1G562900_v2.0.a1
pyrus_communis	pycom08g19650 pycom15g37180
rosa_chinensis	RchiOBHm_Chr7g0224251
rosa_laevigata	RLG00000001910
rosa_multiflora	Rmu_sc0008008.1_g000008
rosa_roxburghii	Rroxscaffold_3G00235010
rosa_rugosa	Rorug07G0221700
rosa_samantha	Rh7AG366700 Rh7BG357700 Rh7CG385200 Rh7DG360600
rosa_wichuraiana	Rw7G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	568
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	579, 592
AcsI	RAATTY	2 cut(s)	155, 638
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	274, 662
AgsI	TTSAA	4 cut(s)	160, 341, 490, 644
AjnI	CCWGG	2 cut(s)	631, 661
AluBI	AGCT	6 cut(s)	74, 178, 412, 508, 563, 596
AluI	AGCT	6 cut(s)	74, 178, 412, 508, 563, 596
Alw26I	GTCTC	2 cut(s)	165, 611
AlwI	GGATC	2 cut(s)	579, 592
AoxI	GGCC	2 cut(s)	23, 265
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	155, 638
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	422, 659
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	543, 647, 677
AvaII	GGWCC	2 cut(s)	422, 659
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	442, 618
BciT130I	CCWGG	2 cut(s)	633, 663
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	165, 611
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	633, 657, 663
Bme18I	GGWCC	2 cut(s)	422, 659
BmgT120I	GGNCC	2 cut(s)	422, 659
BmiI	GGNNCC	4 cut(s)	208, 453, 586, 629
BmrFI	CCNGG	3 cut(s)	633, 657, 663
BmsI	GCATC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpuMI	CCSGG	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	202, 282, 292, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 662
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	633, 663
BseDI	CCNNGG	4 cut(s)	202, 282, 292, 631
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	274, 662
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	25, 267
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	2 cut(s)	274, 662
BsmAI	GTCTC	2 cut(s)	165, 611
BsmBI	CGTCTC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	25, 267
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	3 cut(s)	87, 239, 584
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	25, 267
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	208, 453, 586, 629
BspPI	GGATC	2 cut(s)	579, 592
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	202, 282, 292, 631
BssMI	GATC	3 cut(s)	87, 239, 584
BssNAI	GTATAC	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	202, 292
Bst1107I	GTATAC	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	633, 663
Bst6I	CTCTTC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	12, 555
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	90, 242, 587
BstMAI	GTCTC	2 cut(s)	165, 611
BstMBI	GATC	3 cut(s)	87, 239, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 627
BstNI	CCWGG	2 cut(s)	633, 663
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	631, 655, 661
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BstZ17I	GTATAC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	25, 267
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	480
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	422, 659
CsiI	ACCWGGT	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	4 cut(s)	142, 220, 293, 443
DdeI	CTNAG	2 cut(s)	12, 555
DpnI	GATC	3 cut(s)	89, 241, 586
DpnII	GATC	3 cut(s)	87, 239, 584
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	202, 292
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	422, 659
Eco57I	CTGAAG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	631, 661
EcoT14I	CCWWGG	2 cut(s)	202, 292
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	2 cut(s)	202, 292
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	4 cut(s)	145, 223, 296, 446
FatI	CATG	4 cut(s)	141, 219, 292, 442
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	25, 267
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	145, 223, 296, 446
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	4 cut(s)	245, 557, 668, 680
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	3 cut(s)	543, 647, 677
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	170, 244, 250, 283
Hpy188III	TCNNGA	2 cut(s)	416, 443
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	7 cut(s)	46, 51, 278, 397, 413, 530, 610
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	223, 377, 395, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 627
HpyF3I	CTNAG	2 cut(s)	12, 555
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	145, 223, 296, 446
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	87, 239, 584
LmnI	GCTCC	4 cut(s)	430, 451, 505, 627
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	465
MabI	ACCWGGT	1 cut(s)	661
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	28, 549
MalI	GATC	3 cut(s)	89, 241, 586
MboI	GATC	3 cut(s)	87, 239, 584
MboII	GAAGA	2 cut(s)	116, 344
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	277, 328, 355, 526
MseI	TTAA	2 cut(s)	351, 614
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	3 cut(s)	633, 657, 663
MvaI	CCWGG	2 cut(s)	633, 663
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	22, 627
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	87, 239, 584
NlaIII	CATG	4 cut(s)	145, 223, 296, 446
NlaIV	GGNNCC	4 cut(s)	208, 453, 586, 629
NmuCI	GTSAC	1 cut(s)	549
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	245, 668, 680
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	631, 661
PspGI	CCWGG	2 cut(s)	631, 661
PspN4I	GGNNCC	4 cut(s)	208, 453, 586, 629
PspPI	GGNCC	2 cut(s)	422, 659
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	351, 614
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	87, 239, 584
Sau96I	GGNCC	2 cut(s)	422, 659
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	3 cut(s)	633, 657, 663
SduI	GDGCHC	1 cut(s)	632
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	422, 659
Sse9I	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
SsiI	CCGC	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	631, 655, 661
StyI	CCWWGG	2 cut(s)	202, 292
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	238, 408
TasI	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
TfiI	GAWTC	3 cut(s)	245, 668, 680
Tru1I	TTAA	2 cut(s)	351, 614
Tru9I	TTAA	2 cut(s)	351, 614
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	2 cut(s)	267, 369
TspGWI	ACGGA	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	422, 659
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	155, 638
XceI	RCATGY	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.