Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008008.1

Orthogroup ID

OG0013445

Physical Location & Seq

Genomic Coordinates Forward (+)

28660 .. 32279

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008008.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgccgaagtctaagcgcgataggccagttacattgtccaagacaaaaaggaagggaagggaacacaaagaagctgtagtgactacgatcaaacaggctgccgaagattacaattcagtatatgtgttttcttttgagaacatgcgaaatctcaaattcaaggagttcagagaccagctcaaatcaaccagcagatttttccttggttccaacaaagtcatgcaaattgctcttggtcgatctgaatctgatgagatcaaaatcggccttcacaaggtttccgaggttctccatggaaatgctggactttgctttaccaatttgccaaaggaagaggttgaaaggttgtttaatgaatatgaggaatatgacttcgcaaggacaggaagcattgcaacagagaaggtcgagcttcaggaaggtcctttggagcagttcagtcatgagatggagccatttctacgaaaacaagggatgcctgttcgtttgaacaaaggtgttgtggagcttgttgcagactacgttgtttgtgaggaaggaaagcctttgtcacctgagtcagctcgtatattgcgtttgttgggatccaagacagctaccttccgtctccacttaatttgcagatggagccccggtgaatttgaactctatgttcccggacctggtgattcaggtgtagaatcctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

229

Amino Acids

26.08

Weight (kDa)

7.71

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25260
fragaria_vesca	FvH4_5g30060 FvH4_5g30060
malus_domestica	MD08G1225200.v1.1 MD15G1418800.v1.1
prunus_persica	Prupe.1G562900_v2.0.a1
pyrus_communis	pycom08g19650 pycom15g37180
rosa_chinensis	RchiOBHm_Chr7g0224251
rosa_laevigata	RLG00000001910
rosa_multiflora	Rmu_sc0008008.1_g000008
rosa_roxburghii	Rroxscaffold_3G00235010
rosa_rugosa	Rorug07G0221700
rosa_samantha	Rh7AG366700 Rh7BG357700 Rh7CG385200 Rh7DG360600
rosa_wichuraiana	Rw7G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AclWI	GGATC	2 cut(s)	579, 592
AcsI	RAATTY	2 cut(s)	155, 638
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	274, 662
AgsI	TTSAA	4 cut(s)	160, 341, 490, 644
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	6 cut(s)	74, 178, 412, 508, 563, 596
AluI	AGCT	6 cut(s)	74, 178, 412, 508, 563, 596
Alw26I	GTCTC	2 cut(s)	165, 611
AlwI	GGATC	2 cut(s)	579, 592
AoxI	GGCC	2 cut(s)	23, 265
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	155, 638
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	422, 659
AsuC2I	CCSGG	2 cut(s)	633, 657
AsuHPI	GGTGA	3 cut(s)	543, 647, 677
AvaII	GGWCC	2 cut(s)	422, 659
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	442, 618
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	2 cut(s)	633, 657
BcoDI	GTCTC	2 cut(s)	165, 611
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	633, 657, 663
Bme18I	GGWCC	2 cut(s)	422, 659
BmgT120I	GGNCC	2 cut(s)	422, 659
BmiI	GGNNCC	4 cut(s)	208, 453, 586, 629
BmrFI	CCNGG	3 cut(s)	633, 657, 663
BmsI	GCATC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpuMI	CCSGG	2 cut(s)	633, 657
BsaBI	GATNNNNATC	2 cut(s)	244, 260
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	202, 282, 292, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 662
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	2 cut(s)	244, 260
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	4 cut(s)	202, 282, 292, 631
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	2 cut(s)	244, 260
BseLI	CCNNNNNNNGG	2 cut(s)	274, 662
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	25, 267
BsiSI	CCGG	2 cut(s)	633, 657
BslI	CCNNNNNNNGG	2 cut(s)	274, 662
BsmAI	GTCTC	2 cut(s)	165, 611
BsmBI	CGTCTC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	25, 267
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	87, 239, 255, 584
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	2 cut(s)	25, 267
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	208, 453, 586, 629
BspPI	GGATC	2 cut(s)	579, 592
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	202, 282, 292, 631
BssMI	GATC	4 cut(s)	87, 239, 255, 584
BssT1I	CCWWGG	2 cut(s)	202, 292
Bst2UI	CCWGG	1 cut(s)	663
Bst6I	CTCTTC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	12, 555
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	90, 242, 258, 587
BstMAI	GTCTC	2 cut(s)	165, 611
BstMBI	GATC	4 cut(s)	87, 239, 255, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 627
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	631, 655, 661
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	25, 267
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	480
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	422, 659
CsiI	ACCWGGT	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	4 cut(s)	142, 220, 293, 443
DdeI	CTNAG	2 cut(s)	12, 555
DpnI	GATC	4 cut(s)	89, 241, 257, 586
DpnII	GATC	4 cut(s)	87, 239, 255, 584
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	202, 292
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	422, 659
Eco57I	CTGAAG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	202, 292
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	2 cut(s)	202, 292
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	4 cut(s)	145, 223, 296, 446
FatI	CATG	4 cut(s)	141, 219, 292, 442
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	25, 267
HapII	CCGG	2 cut(s)	633, 657
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	145, 223, 296, 446
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	4 cut(s)	245, 557, 668, 680
HpaII	CCGG	2 cut(s)	633, 657
HphI	GGTGA	3 cut(s)	543, 647, 677
Hpy188I	TCNGA	4 cut(s)	170, 244, 250, 283
Hpy188III	TCNNGA	2 cut(s)	416, 443
HpyAV	CCTTC	7 cut(s)	46, 51, 278, 397, 413, 530, 610
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	223, 395, 515, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 627
HpyF3I	CTNAG	2 cut(s)	12, 555
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	145, 223, 296, 446
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	87, 239, 255, 584
LmnI	GCTCC	4 cut(s)	430, 451, 505, 627
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	465
MabI	ACCWGGT	1 cut(s)	661
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	28, 79, 549
MalI	GATC	4 cut(s)	89, 241, 257, 586
MboI	GATC	4 cut(s)	87, 239, 255, 584
MboII	GAAGA	2 cut(s)	116, 344
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	277, 328, 355, 526
MseI	TTAA	2 cut(s)	351, 614
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	2 cut(s)	633, 657
MspR9I	CCNGG	3 cut(s)	633, 657, 663
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	22, 627
NciI	CCSGG	2 cut(s)	633, 657
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	4 cut(s)	87, 239, 255, 584
NlaIII	CATG	4 cut(s)	145, 223, 296, 446
NlaIV	GGNNCC	4 cut(s)	208, 453, 586, 629
NmuCI	GTSAC	2 cut(s)	79, 549
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	245, 668, 680
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	4 cut(s)	208, 453, 586, 629
PspPI	GGNCC	2 cut(s)	422, 659
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	351, 614
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	87, 239, 255, 584
Sau96I	GGNCC	2 cut(s)	422, 659
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	3 cut(s)	633, 657, 663
SduI	GDGCHC	1 cut(s)	632
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	422, 659
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
StyD4I	CCNGG	3 cut(s)	631, 655, 661
StyI	CCWWGG	2 cut(s)	202, 292
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	238, 408
TasI	AATT	6 cut(s)	112, 155, 225, 319, 615, 638
TfiI	GAWTC	3 cut(s)	245, 668, 680
Tru1I	TTAA	2 cut(s)	351, 614
Tru9I	TTAA	2 cut(s)	351, 614
TseFI	GTSAC	2 cut(s)	79, 549
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	79, 549
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	422, 659
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	155, 638
XceI	RCATGY	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.