AT1G26140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016569
Physical Location & Seq
Reverse (-)
9038708 .. 9039540
833 bp
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UTR
Exon/CDS
Intron
AT1G26140.1

Sequence Viewer

Length: 489 bp
ATGCCGGTCCTCAGCTTCGTCTTGTCCGAATCTGTGGGTAAACATGATAGGAAATGGGACGAGCAAAATGTTGTGTTGGACACTGCACGTCCTCTATTTCTTCCTGCTGTGATTTTTGTGCATATCAGAGTAATGGAAGAAGATTGTGGTGCATTTGCAGCAGACTGTGTTGTCCTCTCATGTTGCTGCCAGTGCCTTGTCTTACAAGTCAGTGTCTTCATCTTCTTCAAGATCCCTCGTAAACTTGCCAAGAAGATGAAGAAGTTTGTGAAGAGAATATGTGGAAAAACCTTGCAACCAACAATGGAGGATGTCAAAGAGGAGCATTGGTCTGGAAATGGGTTTCCCTTTGAAGAAGGCTCATCAAGATCAATTTGCTTCGAAGATATTGATAGAATGTTGCAGGAACTGTCCATGAACAAAGGGTTCTTGTTTGGAAGCTTCTGGCGCCATGAAGATTCTTCTGACATTTTCGATTTCAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.66

Weight (kDa)

6.09

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26140 AT1G68700 AT3G25597
malus_domestica MD13G1050800.v1.1
prunus_persica Prupe.1G301300_v2.0.a1
pyrus_communis pycom13g04490
rosa_chinensis RchiOBHm_Chr4g0436431
rosa_laevigata RLG00000006519
rosa_rugosa Rorug04G0293800.1
rosa_samantha Rh4AG348300 Rh4BG357000 Rh4CG371500 Rh4DG350700
rosa_wichuraiana Rw4G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 447
AclWI GGATC 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 448
AgsI TTSAA 3 cut(s) 229, 353, 481
AjiI CACGTC 1 cut(s) 89
AluBI AGCT 2 cut(s) 15, 441
AluI AGCT 2 cut(s) 15, 441
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 158, 186
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 170, 173
BfoI RGCGCY 1 cut(s) 451
BisI GCNGC 2 cut(s) 159, 187
BlsI GCNGC 2 cut(s) 160, 188
Bme18I GGWCC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 170, 173
BsgI GTGCAG 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 381
Bsp143I GATC 2 cut(s) 231, 368
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 1 cut(s) 226
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 2 cut(s) 231, 368
BssNI GRCGYC 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 167, 411
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 234, 371
BstMBI GATC 2 cut(s) 231, 368
BstMWI GCNNNNNNNGC 3 cut(s) 158, 192, 447
BstV1I GCAGC 2 cut(s) 170, 173
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 81, 197, 217
CaiI CAGNNNCTG 1 cut(s) 409
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 4 cut(s) 44, 180, 415, 452
CviJI RGCY 3 cut(s) 15, 360, 441
CviKI_1 RGCY 3 cut(s) 15, 360, 441
DdeI CTNAG 1 cut(s) 11
DinI GGCGCC 1 cut(s) 449
DpnI GATC 2 cut(s) 233, 370
DpnII GATC 2 cut(s) 231, 368
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 449
EheI GGCGCC 1 cut(s) 449
FaeI CATG 4 cut(s) 47, 183, 418, 455
FaiI YATR 7 cut(s) 45, 123, 181, 280, 416, 453, 487
FaqI GGGAC 1 cut(s) 71
FatI CATG 4 cut(s) 43, 179, 414, 451
Fnu4HI GCNGC 2 cut(s) 159, 187
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 159, 187
GlaI GCGC 1 cut(s) 449
GluI GCNGC 2 cut(s) 159, 187
HaeII RGCGCY 1 cut(s) 451
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 4 cut(s) 47, 183, 418, 455
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 2 cut(s) 29, 458
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 41, 242
Hpy188I TCNGA 3 cut(s) 28, 128, 466
Hpy188III TCNNGA 3 cut(s) 229, 333, 366
Hpy8I GTNNAC 2 cut(s) 41, 242
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 167, 411
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 6 cut(s) 86, 121, 152, 158, 295, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 192, 447
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 4 cut(s) 47, 183, 418, 455
HspAI GCGC 1 cut(s) 448
KasI GGCGCC 1 cut(s) 447
Kzo9I GATC 2 cut(s) 231, 368
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 6 cut(s) 18, 117, 203, 318, 389, 430
Lsp1109I GCAGC 2 cut(s) 170, 173
MaeII ACGT 1 cut(s) 88
MalI GATC 2 cut(s) 233, 370
MboI GATC 2 cut(s) 231, 368
MflI RGATCY 1 cut(s) 231
MluCI AATT 1 cut(s) 372
Mly113I GGCGCC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 20, 102, 185, 246, 301, 313
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 158, 192, 447
NarI GGCGCC 1 cut(s) 448
NdeII GATC 2 cut(s) 231, 368
NlaIII CATG 4 cut(s) 47, 183, 418, 455
NlaIV GGNNCC 1 cut(s) 449
NspV TTCGAA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 29, 458
PkrI GCNGC 2 cut(s) 160, 188
PluTI GGCGCC 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 231
SatI GCNGC 2 cut(s) 159, 187
Sau3AI GATC 2 cut(s) 231, 368
Sau96I GGNCC 1 cut(s) 7
SetI ASST 4 cut(s) 17, 91, 293, 443
SfoI GGCGCC 1 cut(s) 449
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 1 cut(s) 7
Sse9I AATT 1 cut(s) 372
SspDI GGCGCC 1 cut(s) 447
TaaI ACNGT 2 cut(s) 167, 411
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 381, 474
TasI AATT 1 cut(s) 372
TfiI GAWTC 2 cut(s) 29, 458
TscAI CASTG 3 cut(s) 88, 197, 217
TseI GCWGC 2 cut(s) 158, 186
TspDTI ATGAA 4 cut(s) 208, 272, 431, 468
TspRI CASTG 3 cut(s) 88, 197, 217
VpaK11BI GGWCC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.