RLG00000006519

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016569
Physical Location & Seq
Forward (+)
7986220 .. 7986801
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006519

Sequence Viewer

Length: 582 bp
ATGTGCCACATACAATTCTGGTTGCTTCACCCTTCCCATAACCTCCAAGAAAGGCAAGGAACCTCTCCTCTATGTCTTCTAAACCATTCTCTTCACGACCATCACCCTCTTCCTCCCGACTTCTTCGCCACCATGGAAGATTGCAACGTGCTCGCGGCGGATTGCGTTGTGATCTCATGCTGCTGCCAATGCTTGGTCCTCCAAATCACCGTCTTCATCTTCTTCAAGCTTCCTTGCAAGTTGATCAGAAAGTCGAGGGAGTACACCATGAAGAAACTTCAACAAAGAAGGAGAAAAGGAATTGTTCTGGAAAGCAAAACAGTATATCAATGTGAAAACGACATTGAGAGTATTCGAGAATCAATGAGATCTATGGAGGATATCCACAGTTGCAGAAGTTGCATAGAGGAGGTTGACAAGGTTCTAGAGGAGCTGTATCAGAGAGGAGAGTTTGGATTTGGAAGCTTTTGGGGGGGAGGAGAACTGGGTTTTTCCCCAACTCATCATTTAGGAAGAGATCATCAATTTGACCCTAGTTTCGTACGGTATCAATTGATTGAAATGATTGAGTCAGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.48

Weight (kDa)

6.11

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26140 AT1G68700 AT3G25597
malus_domestica MD13G1050800.v1.1
prunus_persica Prupe.1G301300_v2.0.a1
pyrus_communis pycom13g04490
rosa_chinensis RchiOBHm_Chr4g0436431
rosa_laevigata RLG00000006519
rosa_rugosa Rorug04G0293800.1
rosa_samantha Rh4AG348300 Rh4BG357000 Rh4CG371500 Rh4DG350700
rosa_wichuraiana Rw4G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 193
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 155, 158
AfaI GTAC 2 cut(s) 263, 543
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 226, 281, 560
AluBI AGCT 4 cut(s) 229, 433, 465, 579
AluI AGCT 4 cut(s) 229, 433, 465, 579
Alw21I GWGCWC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 180, 183
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 3 cut(s) 20, 95, 199
AvaII GGWCC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 68, 205
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 167, 170
BccI CCATC 1 cut(s) 108
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BclI TGATCA 1 cut(s) 243
BfaI CTAG 2 cut(s) 425, 534
BglII AGATCT 1 cut(s) 368
BisI GCNGC 3 cut(s) 156, 181, 184
BlsI GCNGC 3 cut(s) 157, 182, 185
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 2 cut(s) 68, 205
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 5 cut(s) 57, 422, 443, 459, 492
BseXI GCAGC 2 cut(s) 167, 170
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 153
BsiWI CGTACG 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 4 cut(s) 171, 243, 368, 517
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 2 cut(s) 155, 158
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 171, 243, 368, 517
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 4 cut(s) 211, 322, 389, 546
Bst6I CTCTTC 3 cut(s) 96, 114, 508
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 4 cut(s) 174, 246, 371, 520
BstMBI GATC 4 cut(s) 171, 243, 368, 517
BstMWI GCNNNNNNNGC 2 cut(s) 189, 399
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 167, 170
BstV2I GAAGAC 2 cut(s) 68, 205
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 262, 542
CviAII CATG 3 cut(s) 133, 177, 268
CviJI RGCY 4 cut(s) 229, 433, 465, 579
CviKI_1 RGCY 4 cut(s) 229, 433, 465, 579
CviQI GTAC 2 cut(s) 262, 542
DpnI GATC 4 cut(s) 173, 245, 370, 519
DpnII GATC 4 cut(s) 171, 243, 368, 517
Eam1104I CTCTTC 3 cut(s) 96, 114, 508
EarI CTCTTC 3 cut(s) 96, 114, 508
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 132
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 196
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 136, 180, 271
FaiI YATR 9 cut(s) 11, 39, 73, 134, 178, 269, 325, 374, 404
FatI CATG 3 cut(s) 132, 176, 267
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 156, 181, 184
Fsp4HI GCNGC 3 cut(s) 156, 181, 184
FspBI CTAG 2 cut(s) 425, 534
GluI GCNGC 3 cut(s) 156, 181, 184
Hin1II CATG 3 cut(s) 136, 180, 271
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 2 cut(s) 227, 463
HinfI GANTC 2 cut(s) 359, 569
HphI GGTGA 3 cut(s) 20, 95, 199
Hpy166II GTNNAC 2 cut(s) 264, 415
Hpy188I TCNGA 2 cut(s) 248, 441
Hpy188III TCNNGA 5 cut(s) 95, 116, 308, 356, 425
Hpy8I GTNNAC 2 cut(s) 264, 415
HpyAV CCTTC 2 cut(s) 42, 282
HpyCH4III ACNGT 4 cut(s) 211, 322, 389, 546
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 144, 237, 393, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 399
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 136, 180, 271
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 4 cut(s) 171, 243, 368, 517
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 3 cut(s) 4, 293, 470
Lsp1109I GCAGC 2 cut(s) 167, 170
MaeI CTAG 2 cut(s) 425, 534
MaeII ACGT 1 cut(s) 147
MalI GATC 4 cut(s) 173, 245, 370, 519
MboI GATC 4 cut(s) 171, 243, 368, 517
MfeI CAATTG 1 cut(s) 551
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 4 cut(s) 14, 300, 524, 551
MlyI GAGTC 1 cut(s) 578
MunI CAATTG 1 cut(s) 551
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 189, 399
NcoI CCATGG 1 cut(s) 132
NdeII GATC 4 cut(s) 171, 243, 368, 517
NlaIII CATG 3 cut(s) 136, 180, 271
NlaIV GGNNCC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 359
Pfl23II CGTACG 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 3 cut(s) 157, 182, 185
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PspLI CGTACG 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 263, 543
RsaNI GTAC 2 cut(s) 262, 542
SatI GCNGC 3 cut(s) 156, 181, 184
Sau3AI GATC 4 cut(s) 171, 243, 368, 517
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 578
SduI GDGCHC 1 cut(s) 153
SetI ASST 9 cut(s) 45, 65, 150, 231, 414, 423, 435, 467, 581
SinI GGWCC 1 cut(s) 196
Sse9I AATT 4 cut(s) 14, 300, 524, 551
SsiI CCGC 2 cut(s) 155, 158
SspMI CTAG 2 cut(s) 425, 534
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 211, 322, 389, 546
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 254, 355
TasI AATT 4 cut(s) 14, 300, 524, 551
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 359
TseI GCWGC 2 cut(s) 180, 183
TspDTI ATGAA 2 cut(s) 205, 284
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 424
XspI CTAG 2 cut(s) 425, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.