Rh4DG350700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
57235630 .. 57235965
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG350700.1

Sequence Viewer

Length: 336 bp
ATGTGCCACATACAATTCTGGTTGCTTCACCCTTCCCATAACCTCCAAGAAAGGCAAGGAACTAACTCCTCCATGTCTTCTAAACCATTCTCTTCACCACCATCACCCCCTTCCTCCCGACTTCTTCGCCACCATGGAAGATTGCAACGTGCTCGCGGCGGATTGCGTTGTGATCTCGTGCTGCTGCCAATGCTTGATCCTCCAAATCACCATCTTCATCTTCTTCAAGCTTCCTTGCAAGTTGATCAGAAAGACGAGGGAGTACACCATGAAGAAGCTTCAACAAAGAAGGAGAAAAGGGATTGTTGTGGAAAGCAAAACAGTATATCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

9.13

Isoelectric Point (pI)

76.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26140 AT1G68700 AT3G25597
malus_domestica MD13G1050800.v1.1
prunus_persica Prupe.1G301300_v2.0.a1
pyrus_communis pycom13g04490
rosa_chinensis RchiOBHm_Chr4g0436431
rosa_laevigata RLG00000006519
rosa_rugosa Rorug04G0293800.1
rosa_samantha Rh4AG348300 Rh4BG357000 Rh4CG371500 Rh4DG350700
rosa_wichuraiana Rw4G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 156, 159
AclWI GGATC 1 cut(s) 191
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 2 cut(s) 227, 282
AluBI AGCT 2 cut(s) 230, 278
AluI AGCT 2 cut(s) 230, 278
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 181, 184
AsuHPI GGTGA 4 cut(s) 20, 87, 96, 200
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 168, 171
BccI CCATC 2 cut(s) 109, 219
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 1 cut(s) 244
BisI GCNGC 3 cut(s) 157, 182, 185
BlsI GCNGC 3 cut(s) 158, 183, 186
BpiI GAAGAC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 168, 171
Bsh1236I CGCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 172, 196, 244
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 2 cut(s) 156, 159
BspFNI CGCG 1 cut(s) 156
BspPI GGATC 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 172, 196, 244
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 175, 199, 247
BstMBI GATC 3 cut(s) 172, 196, 244
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 168, 171
BstV2I GAAGAC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 263
CviAII CATG 3 cut(s) 73, 134, 269
CviJI RGCY 2 cut(s) 230, 278
CviKI_1 RGCY 2 cut(s) 230, 278
CviQI GTAC 1 cut(s) 263
DpnI GATC 3 cut(s) 174, 198, 246
DpnII GATC 3 cut(s) 172, 196, 244
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 76, 137, 272
FaiI YATR 6 cut(s) 11, 39, 74, 135, 270, 326
FatI CATG 3 cut(s) 72, 133, 268
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 157, 182, 185
Fsp4HI GCNGC 3 cut(s) 157, 182, 185
GluI GCNGC 3 cut(s) 157, 182, 185
Hin1II CATG 3 cut(s) 76, 137, 272
HindIII AAGCTT 2 cut(s) 228, 276
HphI GGTGA 4 cut(s) 20, 87, 96, 200
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 42, 120, 283
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 145, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 76, 137, 272
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 172, 196, 244
LpnPI CCDG 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 168, 171
MaeII ACGT 1 cut(s) 148
MalI GATC 3 cut(s) 174, 198, 246
MboI GATC 3 cut(s) 172, 196, 244
MboII GAAGA 8 cut(s) 69, 84, 116, 150, 206, 212, 215, 284
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 14
MnlI CCTC 5 cut(s) 53, 79, 124, 210, 250
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 190
NcoI CCATGG 1 cut(s) 133
NdeII GATC 3 cut(s) 172, 196, 244
NlaIII CATG 3 cut(s) 76, 137, 272
PkrI GCNGC 3 cut(s) 158, 183, 186
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SatI GCNGC 3 cut(s) 157, 182, 185
Sau3AI GATC 3 cut(s) 172, 196, 244
SduI GDGCHC 1 cut(s) 154
SetI ASST 4 cut(s) 45, 151, 232, 280
Sse9I AATT 1 cut(s) 14
SsiI CCGC 2 cut(s) 156, 159
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 151
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 159
TseI GCWGC 2 cut(s) 181, 184
TspDTI ATGAA 2 cut(s) 206, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.