Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016569

Physical Location & Seq

Genomic Coordinates Reverse (-)

3039514 .. 3039984

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAGACTGCAACATGATCGCCGCAGACTGCGTCGTGATTTCATGCTGCTGCCAGTGCTTGATCCTCCAAATCACCATCTTCATCTTGTACAAGCTCCCTTGCAAGTCGATCCGAAAGACGAGAGAGTACACCATGAAGAAACTTCAACAGAGAAGGAGAAAGGAAATTATAGTGTTGGATACATGTAAAGATGTTGACTTTGCGAGTGTTGTCGGAGAGTCTATGAGATCACCCATGGAGGCAGGAGGAGGACATAGTTGCAGGCGCTGCATGGAGGAGGTGGAGGAGGTGCTGCAGGAGTTTTCTCAGAGAGGAGAGTTTGGATTTGGAAGCTTTTGGGGTAGGGGAGAATTGGGTTGCTCCCCAACTCATCATTCACCAAATCATGATCCATTTGATGCTAGTTTTGTACAATATCACCTGATTGAAATGGTGGCTCTGTCATCTATTGATCATAAAGCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.77

Weight (kDa)

6.29

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26140 AT1G68700 AT3G25597
malus_domestica	MD13G1050800.v1.1
prunus_persica	Prupe.1G301300_v2.0.a1
pyrus_communis	pycom13g04490
rosa_chinensis	RchiOBHm_Chr4g0436431
rosa_laevigata	RLG00000006519
rosa_rugosa	Rorug04G0293800.1
rosa_samantha	Rh4AG348300 Rh4BG357000 Rh4CG371500 Rh4DG350700
rosa_wichuraiana	Rw4G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	58, 106, 386
AfaI	GTAC	3 cut(s)	92, 131, 414
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	149, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	97, 336, 464
AluI	AGCT	3 cut(s)	97, 336, 464
AlwI	GGATC	3 cut(s)	58, 106, 386
AlwNI	CAGNNNCTG	1 cut(s)	270
ApeKI	GCWGC	4 cut(s)	48, 51, 270, 295
AspLEI	GCGC	1 cut(s)	270
AsuHPI	GGTGA	4 cut(s)	67, 225, 372, 413
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	35, 38, 257, 282
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	405, 465
BfmI	CTRYAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	5 cut(s)	24, 49, 52, 271, 296
BlsI	GCNGC	5 cut(s)	25, 50, 53, 272, 297
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	4 cut(s)	264, 293, 302, 330
BseXI	GCAGC	4 cut(s)	35, 38, 257, 282
Bsp1407I	TGTACA	2 cut(s)	90, 412
Bsp143I	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	3 cut(s)	58, 106, 386
BsrGI	TGTACA	2 cut(s)	90, 412
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
BssT1I	CCWWGG	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstAUI	TGTACA	2 cut(s)	90, 412
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	21, 66, 114, 233, 394, 457
BstMBI	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 270
BstNSI	RCATGY	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	35, 38, 257, 282
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	270
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	91, 130, 413
CviAII	CATG	7 cut(s)	16, 45, 136, 186, 238, 274, 389
CviJI	RGCY	4 cut(s)	97, 336, 440, 464
CviKI_1	RGCY	4 cut(s)	97, 336, 440, 464
CviQI	GTAC	3 cut(s)	91, 130, 413
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	6 cut(s)	20, 65, 113, 232, 393, 456
DpnII	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
Eco130I	CCWWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	7 cut(s)	19, 48, 139, 189, 241, 277, 392
FatI	CATG	7 cut(s)	15, 44, 135, 185, 237, 273, 388
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	5 cut(s)	24, 49, 52, 271, 296
Fsp4HI	GCNGC	5 cut(s)	24, 49, 52, 271, 296
FspBI	CTAG	2 cut(s)	405, 465
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	5 cut(s)	24, 49, 52, 271, 296
HaeII	RGCGCY	1 cut(s)	271
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	7 cut(s)	19, 48, 139, 189, 241, 277, 392
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	4 cut(s)	67, 225, 372, 413
Hpy166II	GTNNAC	2 cut(s)	132, 199
Hpy188I	TCNGA	3 cut(s)	116, 218, 312
Hpy188III	TCNNGA	2 cut(s)	37, 389
Hpy8I	GTNNAC	2 cut(s)	132, 199
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	12, 105, 264, 273, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 270
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	19, 48, 139, 189, 241, 277, 392
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
LmnI	GCTCC	2 cut(s)	102, 368
LpnPI	CCDG	5 cut(s)	68, 231, 250, 284, 437
Lsp1109I	GCAGC	4 cut(s)	35, 38, 257, 282
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	405, 465
MalI	GATC	6 cut(s)	20, 65, 113, 232, 393, 456
MboI	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
MboII	GAAGA	3 cut(s)	17, 73, 151
MluCI	AATT	2 cut(s)	168, 353
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	159, 196
MnlI	CCTC	9 cut(s)	77, 235, 242, 245, 271, 274, 280, 283, 308
MwoI	GCNNNNNNNGC	2 cut(s)	57, 270
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
NlaIII	CATG	7 cut(s)	19, 48, 139, 189, 241, 277, 392
NspI	RCATGY	1 cut(s)	189
PagI	TCATGA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	25, 50, 53, 272, 297
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	3 cut(s)	92, 131, 414
RsaNI	GTAC	3 cut(s)	91, 130, 413
SatI	GCNGC	5 cut(s)	24, 49, 52, 271, 296
Sau3AI	GATC	6 cut(s)	18, 63, 111, 230, 391, 454
SchI	GAGTC	1 cut(s)	230
SetI	ASST	7 cut(s)	99, 285, 294, 338, 426, 466, 470
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	168, 353
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	405, 465
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	168, 353
TatI	WGTACW	3 cut(s)	90, 129, 412
TauI	GCSGC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	4 cut(s)	48, 51, 270, 295
TspDTI	ATGAA	3 cut(s)	33, 73, 152
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	2 cut(s)	405, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.