Rw4G030440

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
57176020 .. 57176927
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030440.1

Sequence Viewer

Length: 450 bp
ATGGAAGATTGCAACGTGCTCGCGGCGGATTGCGTTGTGATCTCGTGCTGCTGCCAATGCTTGATCCTCCAAATCACCATCTTCATCTTCTTCAAGCTTCCTTGCAAGTTGATCAGAAAGACGAGGGAGTACACCATGAAGAAGCTTCAACAAAGAAGGAGAAAAGGGATTGTTGTGGAAAGCAAAACAGTATATCAATGTGAAAACGACATTGAGAGTATTCGAGAATCAATGAGATCTGTGGAGGATATCCACAGTTGCAGAAGTTGCATAGAGGAGGTTGACAAGGTTCTAGAGGAGCTGTATCAGAGAGGAGAGTTTGGATTTGGAAGCTTTTGGGGGGGAGGAGAACTGGGTTTCTCCCCAACTCATCATTTAGGAGAAGATGATCGATTTGACCCTAGTTTCGTACGGTATCAATTGATTGAAATGATTGAGTCAGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.31

Weight (kDa)

5.28

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26140 AT1G68700 AT3G25597
malus_domestica MD13G1050800.v1.1
prunus_persica Prupe.1G301300_v2.0.a1
pyrus_communis pycom13g04490
rosa_chinensis RchiOBHm_Chr4g0436431
rosa_laevigata RLG00000006519
rosa_rugosa Rorug04G0293800.1
rosa_samantha Rh4AG348300 Rh4BG357000 Rh4CG371500 Rh4DG350700
rosa_wichuraiana Rw4G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 23, 26
AclWI GGATC 1 cut(s) 58
AfaI GTAC 2 cut(s) 131, 411
AgsI TTSAA 3 cut(s) 94, 149, 428
AluBI AGCT 5 cut(s) 97, 145, 301, 333, 447
AluI AGCT 5 cut(s) 97, 145, 301, 333, 447
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 48, 51
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuHPI GGTGA 1 cut(s) 67
BauI CACGAG 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 35, 38
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 1 cut(s) 35
BclI TGATCA 1 cut(s) 111
BfaI CTAG 2 cut(s) 293, 402
BglII AGATCT 1 cut(s) 236
BisI GCNGC 3 cut(s) 24, 49, 52
BlsI GCNGC 3 cut(s) 25, 50, 53
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
Bsa29I ATCGAT 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 391
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 4 cut(s) 290, 311, 327, 360
BseXI GCAGC 2 cut(s) 35, 38
Bsh1236I CGCG 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 21
BsiWI CGTACG 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 5 cut(s) 39, 63, 111, 236, 388
BspACI CCGC 2 cut(s) 23, 26
BspDI ATCGAT 1 cut(s) 391
BspFNI CGCG 1 cut(s) 23
BspPI GGATC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 357
BssMI GATC 5 cut(s) 39, 63, 111, 236, 388
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 190, 257, 414
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 21
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 5 cut(s) 42, 66, 114, 239, 391
BstMBI GATC 5 cut(s) 39, 63, 111, 236, 388
BstMWI GCNNNNNNNGC 2 cut(s) 57, 267
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 35, 38
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 2 cut(s) 130, 410
CviAII CATG 1 cut(s) 136
CviJI RGCY 5 cut(s) 97, 145, 301, 333, 447
CviKI_1 RGCY 5 cut(s) 97, 145, 301, 333, 447
CviQI GTAC 2 cut(s) 130, 410
DpnI GATC 5 cut(s) 41, 65, 113, 238, 390
DpnII GATC 5 cut(s) 39, 63, 111, 236, 388
EciI GGCGGA 1 cut(s) 41
Eco32I GATATC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 250
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 193, 272
FatI CATG 1 cut(s) 135
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 24, 49, 52
Fsp4HI GCNGC 3 cut(s) 24, 49, 52
FspBI CTAG 2 cut(s) 293, 402
GluI GCNGC 3 cut(s) 24, 49, 52
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 3 cut(s) 95, 143, 331
HinfI GANTC 2 cut(s) 227, 437
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 132, 283
Hpy188I TCNGA 2 cut(s) 116, 309
Hpy188III TCNNGA 2 cut(s) 224, 293
Hpy8I GTNNAC 2 cut(s) 132, 283
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 3 cut(s) 190, 257, 414
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 12, 105, 261, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 267
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 5 cut(s) 39, 63, 111, 236, 388
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 1 cut(s) 338
Lsp1109I GCAGC 2 cut(s) 35, 38
MaeI CTAG 2 cut(s) 293, 402
MaeII ACGT 1 cut(s) 15
MalI GATC 5 cut(s) 41, 65, 113, 238, 390
MboI GATC 5 cut(s) 39, 63, 111, 236, 388
MboII GAAGA 6 cut(s) 17, 73, 79, 82, 151, 395
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 419
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 8 cut(s) 77, 117, 238, 268, 271, 289, 305, 338
MunI CAATTG 1 cut(s) 419
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 57, 267
NdeII GATC 5 cut(s) 39, 63, 111, 236, 388
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 1 cut(s) 227
Pfl23II CGTACG 1 cut(s) 409
PkrI GCNGC 3 cut(s) 25, 50, 53
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspLI CGTACG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 2 cut(s) 131, 411
RsaNI GTAC 2 cut(s) 130, 410
SatI GCNGC 3 cut(s) 24, 49, 52
Sau3AI GATC 5 cut(s) 39, 63, 111, 236, 388
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 18, 99, 147, 282, 291, 303, 335, 449
Sse9I AATT 1 cut(s) 419
SsiI CCGC 2 cut(s) 23, 26
SspMI CTAG 2 cut(s) 293, 402
TaaI ACNGT 3 cut(s) 190, 257, 414
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 223, 391
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 227
TseI GCWGC 2 cut(s) 48, 51
TspDTI ATGAA 2 cut(s) 73, 152
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 2 cut(s) 293, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.