AT1G27310

nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013913
Physical Location & Seq
Reverse (-)
9484316 .. 9486002
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27310.1

Sequence Viewer

Length: 369 bp
ATGGATCCAGACGCTGTTGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGATGCAAATCGTCCAGGGTTGGTTTCTCTATACCAAGAAGGATCCATGTTGACCTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCGGCCTCCCTTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGTGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGACATATTCAGGTTGAACTATGCCTGA

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

6.01

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 6 - 119 7.1e-38 Nuclear transport factor 2 (NTF2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27310
fragaria_vesca FvH4_4g23580
malus_domestica MD13G1121000.v1.1 MD16G1121000.v1.1
prunus_persica Prupe.1G224200_v2.0.a1
pyrus_communis pycom13g10530 pycom16g10360
rosa_chinensis RchiOBHm_Chr4g0430001
rosa_laevigata RLG00000007015
rosa_multiflora Rmu_ssc0000150.1_g000036
rosa_roxburghii Rroxscaffold_5G00371810
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296300 Rh4BG302800 Rh4CG318300 Rh4DG300100
rosa_wichuraiana Rw4G025670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 4 cut(s) 12, 90, 103, 118
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 2 cut(s) 340, 358
AjnI CCWGG 2 cut(s) 67, 126
AluBI AGCT 2 cut(s) 154, 262
AluI AGCT 2 cut(s) 154, 262
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 4 cut(s) 12, 90, 103, 118
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 2 cut(s) 115, 160
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 148, 184, 281
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 218
BamHI GGATCC 2 cut(s) 4, 95
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 69, 128
BcoDI GTCTC 1 cut(s) 250
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 69, 128
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 6, 97, 220
BmrFI CCNGG 2 cut(s) 69, 128
BmsI GCATC 1 cut(s) 46
Bpu1102I GCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 68, 127
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 158, 224
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 69, 128
BseDI CCNNGG 2 cut(s) 68, 127
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 149
BshFI GGCC 2 cut(s) 117, 162
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 3 cut(s) 159, 225, 249
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 117, 162
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 39, 134
Bsp143I GATC 3 cut(s) 4, 95, 123
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 117, 162
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 6, 97, 220
BspPI GGATC 4 cut(s) 12, 90, 103, 118
BspT104I TTCGAA 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 158, 224
BssAI RCCGGY 2 cut(s) 158, 224
BssECI CCNNGG 2 cut(s) 68, 127
BssMI GATC 3 cut(s) 4, 95, 123
Bst2UI CCWGG 2 cut(s) 69, 128
Bst4CI ACNGT 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 135, 150
BstKTI GATC 3 cut(s) 7, 98, 126
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 4, 95, 123
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 2 cut(s) 69, 128
BstSCI CCNGG 2 cut(s) 67, 126
BstX2I RGATCY 3 cut(s) 4, 95, 123
BstYI RGATCY 3 cut(s) 4, 95, 123
BsuRI GGCC 2 cut(s) 117, 162
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 264
CaiI CAGNNNCTG 1 cut(s) 14
Cfr10I RCCGGY 2 cut(s) 158, 224
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 20
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 26, 117, 132, 154, 162, 211, 262, 294
CviKI_1 RGCY 8 cut(s) 26, 117, 132, 154, 162, 211, 262, 294
DdeI CTNAG 2 cut(s) 135, 150
DpnI GATC 3 cut(s) 6, 97, 125
DpnII GATC 3 cut(s) 4, 95, 123
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 67, 126
EcoRV GATATC 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 85, 101, 233, 347, 363
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 117, 162
HapII CCGG 3 cut(s) 159, 225, 249
HgaI GACGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 316
HpaII CCGG 3 cut(s) 159, 225, 249
HphI GGTGA 3 cut(s) 148, 184, 281
Hpy166II GTNNAC 2 cut(s) 105, 272
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 105, 272
Hpy99I CGWCG 2 cut(s) 149, 203
HpyAV CCTTC 5 cut(s) 61, 86, 107, 118, 222
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 20, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 135, 150
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 3 cut(s) 4, 95, 123
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 333
MalI GATC 3 cut(s) 6, 97, 125
MboI GATC 3 cut(s) 4, 95, 123
MboII GAAGA 2 cut(s) 133, 248
MflI RGATCY 3 cut(s) 4, 95, 123
MhlI GDGCHC 2 cut(s) 39, 134
MnlI CCTC 1 cut(s) 173
MspI CCGG 3 cut(s) 159, 225, 249
MspR9I CCNGG 2 cut(s) 69, 128
MvaI CCWGG 2 cut(s) 69, 128
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 3 cut(s) 4, 95, 123
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 6, 97, 220
NspV TTCGAA 1 cut(s) 111
PfeI GAWTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 67, 126
PspGI CCWGG 2 cut(s) 67, 126
PspN4I GGNNCC 3 cut(s) 6, 97, 220
PspPI GGNCC 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 3 cut(s) 4, 95, 123
Sau3AI GATC 3 cut(s) 4, 95, 123
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 69, 128
SduI GDGCHC 2 cut(s) 39, 134
SetI ASST 6 cut(s) 53, 110, 156, 264, 336, 356
SfaNI GCATC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 111
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SsiI CCGC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 67, 126
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 336
TaqI TCGA 4 cut(s) 54, 111, 201, 314
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 182
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.