FvH4_4g23580

Nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013913
Physical Location & Seq
Reverse (-)
26021693 .. 26023510
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23580.t1

Sequence Viewer

Length: 372 bp
ATGGATCCAGACGCGGTGGCTAAGGCATTCGTGGAGCACTACTACTCGCAGTTCGATTCGAACCGCGCGGCGCTAGCCAATCTGTACCAGGAGGGCTCCATGTTGACCTTCGAAGGCCAGAAGATCCAAGGCTCTCAGAACATCGTCGCTAAGCTCACCAGCCTCCCTTTCCAGCAGTGCCAGCACAGCATCACCACCGTCGATTGCCAGCCCTCTGGCCCCGCCGGCGGTATGCTCGTCTTCGTCAGCGGCAACCTCCAGCTCGCCGGCGAACAGCACGCTCTCAAGTTCAGCCAGATGTTCCATCTGATGCCTACTCCACAAGGAAGCTTTTACGTCTTCAATGACATTTTCCGGTTGAACTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2

Protein Analysis

124

Amino Acids

13.63

Weight (kDa)

5.67

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 6 - 120 3.7e-39 Nuclear transport factor 2 (NTF2) domain
NXF_NTF2 PF22602 43 - 118 7e-06 Nuclear RNA export factor, NTF2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27310
fragaria_vesca FvH4_4g23580
malus_domestica MD13G1121000.v1.1 MD16G1121000.v1.1
prunus_persica Prupe.1G224200_v2.0.a1
pyrus_communis pycom13g10530 pycom16g10360
rosa_chinensis RchiOBHm_Chr4g0430001
rosa_laevigata RLG00000007015
rosa_multiflora Rmu_ssc0000150.1_g000036
rosa_roxburghii Rroxscaffold_5G00371810
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296300 Rh4BG302800 Rh4CG318300 Rh4DG300100
rosa_wichuraiana Rw4G025670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 14, 66, 68
AciI CCGC 6 cut(s) 14, 64, 68, 222, 228, 249
AclWI GGATC 2 cut(s) 12, 118
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 343, 361
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 154, 262, 330
AluI AGCT 3 cut(s) 154, 262, 330
Alw21I GWGCWC 1 cut(s) 39
AlwI GGATC 2 cut(s) 12, 118
AoxI GGCC 2 cut(s) 115, 217
AspLEI GCGC 2 cut(s) 68, 73
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 148, 184
AsuII TTCGAA 2 cut(s) 59, 111
AsuNHI GCTAGC 1 cut(s) 73
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 232, 331
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 2 cut(s) 69, 250
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 2 cut(s) 70, 251
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 6, 97, 220
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 198, 300
BmtI GCTAGC 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 232, 331
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 2 cut(s) 59, 111
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 224, 266
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 149
Bsh1236I CGCG 3 cut(s) 14, 66, 68
BshFI GGCC 2 cut(s) 117, 219
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 3 cut(s) 225, 267, 355
BslI CCNNNNNNNGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 117, 219
Bsp119I TTCGAA 2 cut(s) 59, 111
Bsp1286I GDGCHC 2 cut(s) 39, 98
Bsp143I GATC 2 cut(s) 4, 123
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 6 cut(s) 14, 64, 68, 222, 228, 249
BspANI GGCC 2 cut(s) 117, 219
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 3 cut(s) 14, 66, 68
BspLI GGNNCC 3 cut(s) 6, 97, 220
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 12, 118
BspT104I TTCGAA 2 cut(s) 59, 111
BsrFI RCCGGY 2 cut(s) 224, 266
BssAI RCCGGY 2 cut(s) 224, 266
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 4, 123
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 2 cut(s) 59, 111
BstC8I GCNNGC 7 cut(s) 75, 182, 209, 226, 264, 268, 279
BstDEI CTNAG 3 cut(s) 21, 135, 150
BstFNI CGCG 3 cut(s) 14, 66, 68
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 68, 73
BstKTI GATC 2 cut(s) 7, 126
BstMBI GATC 2 cut(s) 4, 123
BstMWI GCNNNNNNNGC 4 cut(s) 74, 181, 186, 225
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 3 cut(s) 14, 66, 68
BstV2I GAAGAC 2 cut(s) 232, 331
BstX2I RGATCY 2 cut(s) 4, 123
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 4, 123
BsuRI GGCC 2 cut(s) 117, 219
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 7 cut(s) 75, 182, 209, 226, 264, 268, 279
CfoI GCGC 2 cut(s) 68, 73
Cfr10I RCCGGY 2 cut(s) 224, 266
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 100, 369
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 21, 135, 150
DpnI GATC 2 cut(s) 6, 125
DpnII GATC 2 cut(s) 4, 123
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 103, 372
FaiI YATR 4 cut(s) 101, 233, 366, 370
FatI CATG 2 cut(s) 99, 368
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 69, 250
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 69, 250
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 67, 72
GluI GCNGC 2 cut(s) 69, 250
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 117, 219
HapII CCGG 3 cut(s) 225, 267, 355
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 68, 73
Hin1II CATG 2 cut(s) 103, 372
Hin6I GCGC 2 cut(s) 66, 71
HinP1I GCGC 2 cut(s) 66, 71
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 56
HpaII CCGG 3 cut(s) 225, 267, 355
HphI GGTGA 2 cut(s) 148, 184
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 138, 309
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 2 cut(s) 149, 203
HpyAV CCTTC 2 cut(s) 107, 118
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 181, 186, 225
HpyF3I CTNAG 3 cut(s) 21, 135, 150
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 2 cut(s) 103, 372
HspAI GCGC 2 cut(s) 66, 71
KroI GCCGGC 2 cut(s) 224, 266
KroNI GCCGGC 2 cut(s) 226, 268
Kzo9I GATC 2 cut(s) 4, 123
LmnI GCTCC 2 cut(s) 34, 101
LweI GCATC 2 cut(s) 198, 300
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 336
MalI GATC 2 cut(s) 6, 125
MboI GATC 2 cut(s) 4, 123
MboII GAAGA 3 cut(s) 133, 232, 331
MflI RGATCY 2 cut(s) 4, 123
MhlI GDGCHC 2 cut(s) 39, 98
MnlI CCTC 4 cut(s) 85, 173, 223, 266
Mph1103I ATGCAT 1 cut(s) 370
MreI CGCCGGCG 2 cut(s) 224, 266
MroNI GCCGGC 2 cut(s) 224, 266
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 3 cut(s) 225, 267, 355
MspR9I CCNGG 1 cut(s) 89
MteI GCGCNGCGC 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 3 cut(s) 14, 66, 68
MwoI GCNNNNNNNGC 4 cut(s) 74, 181, 186, 225
NaeI GCCGGC 2 cut(s) 226, 268
NdeII GATC 2 cut(s) 4, 123
NgoMIV GCCGGC 2 cut(s) 224, 266
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 103, 372
NlaIV GGNNCC 3 cut(s) 6, 97, 220
NsiI ATGCAT 1 cut(s) 370
NspV TTCGAA 2 cut(s) 59, 111
PctI GAATGC 1 cut(s) 26
PdiI GCCGGC 2 cut(s) 226, 268
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 70, 251
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 6, 97, 220
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 2 cut(s) 4, 123
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 2 cut(s) 69, 250
Sau3AI GATC 2 cut(s) 4, 123
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 39, 98
SetI ASST 6 cut(s) 110, 156, 258, 264, 332, 339
SfaNI GCATC 2 cut(s) 198, 300
SfuI TTCGAA 2 cut(s) 59, 111
SgrAI CRCCGGYG 2 cut(s) 224, 266
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SsiI CCGC 6 cut(s) 14, 64, 68, 222, 228, 249
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 339
TaqI TCGA 4 cut(s) 54, 59, 111, 201
TauI GCSGC 2 cut(s) 71, 252
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 182
TspRI CASTG 1 cut(s) 182
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.