Prupe.1G224200_v2.0.a1

Nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013913
Physical Location & Seq
Reverse (-)
23786590 .. 23789393
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G224200.1

Sequence Viewer

Length: 372 bp
ATGGATCCAGATTCGGTGGCCAAAGCATTCGTGGAGCATTACTATACGTTGTTCGACGCGAATCGCGGGGCCTTGGCGAATTTGTACCAAGAAGGTTCGATGTTGACCTTCGAAGGTCAGAAGATCCAAGGGTCACAAAACATCGTGGCCAAGCTCACAAGCCTCCCTTTCCAGCAGTGCCAGCACAGCATCACCACCGTCGATTGCCAGCCCTCTGGCCCAGCCGGCGGCATGCTCGTCTTCGTCAGCGGCAATCTCCAGCTCGCCGGTGAGCAGCATGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCTACTCCACAGGGAAGCTTCTATGTGTTCAATGACATTTTCCGGTTGAACTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

5.67

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27310
fragaria_vesca FvH4_4g23580
malus_domestica MD13G1121000.v1.1 MD16G1121000.v1.1
prunus_persica Prupe.1G224200_v2.0.a1
pyrus_communis pycom13g10530 pycom16g10360
rosa_chinensis RchiOBHm_Chr4g0430001
rosa_laevigata RLG00000007015
rosa_multiflora Rmu_ssc0000150.1_g000036
rosa_roxburghii Rroxscaffold_5G00371810
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296300 Rh4BG302800 Rh4CG318300 Rh4DG300100
rosa_wichuraiana Rw4G025670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 59, 66
AciI CCGC 3 cut(s) 66, 228, 249
AclWI GGATC 2 cut(s) 12, 118
AcoI YGGCCR 2 cut(s) 18, 147
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 343, 361
AluBI AGCT 3 cut(s) 154, 262, 330
AluI AGCT 3 cut(s) 154, 262, 330
AlwI GGATC 2 cut(s) 12, 118
AoxI GGCC 4 cut(s) 18, 69, 147, 217
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 69, 218
AsuHPI GGTGA 2 cut(s) 184, 281
AsuII TTCGAA 1 cut(s) 111
BalI TGGCCA 2 cut(s) 20, 149
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 229, 250, 275
BlsI GCNGC 3 cut(s) 230, 251, 276
BmgT120I GGNCC 2 cut(s) 69, 218
BmiI GGNNCC 2 cut(s) 6, 70
BmsI GCATC 2 cut(s) 198, 300
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 72, 127
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 224, 266
BseDI CCNNGG 2 cut(s) 72, 127
BseLI CCNNNNNNNGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 2 cut(s) 59, 66
BshFI GGCC 4 cut(s) 20, 71, 149, 219
BsiSI CCGG 3 cut(s) 225, 267, 355
BslI CCNNNNNNNGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 4 cut(s) 20, 71, 149, 219
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 4, 123
BspACI CCGC 3 cut(s) 66, 228, 249
BspANI GGCC 4 cut(s) 20, 71, 149, 219
BspFNI CGCG 2 cut(s) 59, 66
BspLI GGNNCC 2 cut(s) 6, 70
BspPI GGATC 2 cut(s) 12, 118
BspT104I TTCGAA 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 224, 266
BssAI RCCGGY 2 cut(s) 224, 266
BssECI CCNNGG 2 cut(s) 72, 127
BssMI GATC 2 cut(s) 4, 123
BssT1I CCWWGG 2 cut(s) 72, 127
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 6 cut(s) 182, 209, 226, 233, 264, 279
BstFNI CGCG 2 cut(s) 59, 66
BstKTI GATC 2 cut(s) 7, 126
BstMBI GATC 2 cut(s) 4, 123
BstMWI GCNNNNNNNGC 3 cut(s) 181, 186, 225
BstNSI RCATGY 2 cut(s) 235, 281
BstUI CGCG 2 cut(s) 59, 66
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 4, 123
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 4, 123
BsuRI GGCC 4 cut(s) 20, 71, 149, 219
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 6 cut(s) 182, 209, 226, 233, 264, 279
Cfr10I RCCGGY 2 cut(s) 224, 266
Cfr13I GGNCC 2 cut(s) 69, 218
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 232, 278, 369
CviQI GTAC 1 cut(s) 85
DpnI GATC 2 cut(s) 6, 125
DpnII GATC 2 cut(s) 4, 123
EaeI YGGCCR 2 cut(s) 18, 147
Eco130I CCWWGG 2 cut(s) 72, 127
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 72, 127
EcoT22I ATGCAT 1 cut(s) 370
ErhI CCWWGG 2 cut(s) 72, 127
FaeI CATG 3 cut(s) 235, 281, 372
FaiI YATR 6 cut(s) 45, 233, 279, 336, 366, 370
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 3 cut(s) 231, 277, 368
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 229, 250, 275
Fsp4HI GCNGC 3 cut(s) 229, 250, 275
GluI GCNGC 3 cut(s) 229, 250, 275
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 4 cut(s) 20, 71, 149, 219
HapII CCGG 3 cut(s) 225, 267, 355
HgaI GACGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 235, 281, 372
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 2 cut(s) 11, 61
HpaII CCGG 3 cut(s) 225, 267, 355
HphI GGTGA 2 cut(s) 184, 281
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 2 cut(s) 59, 203
HpyAV CCTTC 3 cut(s) 86, 107, 118
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 186, 225
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 3 cut(s) 235, 281, 372
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 4, 123
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 198, 300
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 132
MalI GATC 2 cut(s) 6, 125
MboI GATC 2 cut(s) 4, 123
MboII GAAGA 2 cut(s) 133, 232
MflI RGATCY 2 cut(s) 4, 123
MlsI TGGCCA 2 cut(s) 20, 149
MluCI AATT 1 cut(s) 79
MluNI TGGCCA 2 cut(s) 20, 149
MnlI CCTC 2 cut(s) 173, 223
Mox20I TGGCCA 2 cut(s) 20, 149
Mph1103I ATGCAT 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 2 cut(s) 20, 149
Msp20I TGGCCA 2 cut(s) 20, 149
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 3 cut(s) 225, 267, 355
Mva1269I GAATGC 1 cut(s) 26
MvnI CGCG 2 cut(s) 59, 66
MwoI GCNNNNNNNGC 3 cut(s) 181, 186, 225
NaeI GCCGGC 1 cut(s) 226
NdeII GATC 2 cut(s) 4, 123
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 3 cut(s) 235, 281, 372
NlaIV GGNNCC 2 cut(s) 6, 70
NmuCI GTSAC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 2 cut(s) 235, 281
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 2 cut(s) 235, 281
PctI GAATGC 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 11, 61
PkrI GCNGC 3 cut(s) 230, 251, 276
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 6, 70
PspPI GGNCC 2 cut(s) 69, 218
PsuI RGATCY 2 cut(s) 4, 123
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 3 cut(s) 229, 250, 275
Sau3AI GATC 2 cut(s) 4, 123
Sau96I GGNCC 2 cut(s) 69, 218
SetI ASST 7 cut(s) 50, 97, 110, 118, 156, 264, 332
SfaNI GCATC 2 cut(s) 198, 300
SfuI TTCGAA 1 cut(s) 111
SgrAI CRCCGGYG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 2 cut(s) 235, 281
Sse9I AATT 1 cut(s) 79
SsiI CCGC 3 cut(s) 66, 228, 249
StyI CCWWGG 2 cut(s) 72, 127
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 50
TaqI TCGA 4 cut(s) 54, 98, 111, 201
TasI AATT 1 cut(s) 79
TauI GCSGC 2 cut(s) 231, 252
TfiI GAWTC 2 cut(s) 11, 61
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 132
TspRI CASTG 1 cut(s) 182
XapI RAATTY 1 cut(s) 79
XceI RCATGY 2 cut(s) 235, 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.