RchiOBHm_Chr4g0430001

Nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013913
Physical Location & Seq
Reverse (-)
54673718 .. 54675514
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39876

Sequence Viewer

Length: 723 bp
ATGGATCCAGACGCGGTGGCCAAGGCATTCGTGGAGCACTACTACTCGCTCTTCGATTCCAACCGCGCTGCCTTAGCCAATCTCTACCAGGAGGGCTCCATGTTGACCTTCGAGGGCCAGAAGATCCAAGGCTCACAGAACATCGTTGCCAAGCTCACCAGCCTCCCTTTCCAGCAGTGCCAGCACAGCATCACCACCGTCGATTGCCAGCCCTCTGGCCCCGCCGGCGGCATGCTCGTCTTCGTCAGCGGCAATCTCCAACTCGCCGGTGAACAGCACGCCCTCAAGTTCAGCCAGTCAGATTCGCTGCGCGCGCATAGTGTTATGCTATGTTTTGACTGTGTAGATTTCAAGGATCATGATACAGCCTATCGTGCCAGTAACGAGCAAAGAGGGATCAGTGGTTTTCTATGCCCAGTTTGGTGTGTGTTTGGTTCTTCTTTCTGGTTATGTAAATTTGAGTGCTCCATTGTGGTCCAGAGGTTGGTGGGATCATGGATTTTCATGGTGAATGTCAGAAAGCTCTATTGTTTTGTTTTACGCATTTGTAACAGTTTTATTTTTATCAATAATATGACTGTTAATAATTGTTCGAATTTAGGATTCTATTCATCTTTTCTGTCTTTTTGGTTTTGGTTTAATTGCTTTGTAGGTATAAGGATCTTGTATTGCCTTTTGCTTTACATCACCACTTTCTCTACACTGGTCTTAGACAACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

6.49

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 6 - 104 6.5e-29 Nuclear transport factor 2 (NTF2) domain
NXF_NTF2 PF22602 7 - 37 9.7e-06 Nuclear RNA export factor, NTF2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27310
fragaria_vesca FvH4_4g23580
malus_domestica MD13G1121000.v1.1 MD16G1121000.v1.1
prunus_persica Prupe.1G224200_v2.0.a1
pyrus_communis pycom13g10530 pycom16g10360
rosa_chinensis RchiOBHm_Chr4g0430001
rosa_laevigata RLG00000007015
rosa_multiflora Rmu_ssc0000150.1_g000036
rosa_roxburghii Rroxscaffold_5G00371810
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296300 Rh4BG302800 Rh4CG318300 Rh4DG300100
rosa_wichuraiana Rw4G025670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 484
AccII CGCG 4 cut(s) 14, 66, 312, 314
AciI CCGC 5 cut(s) 14, 64, 222, 228, 249
AclWI GGATC 6 cut(s) 12, 118, 363, 404, 499, 668
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 455, 595
AfiI CCNNNNNNNGG 2 cut(s) 227, 484
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 154, 523
AluI AGCT 2 cut(s) 154, 523
Alw21I GWGCWC 2 cut(s) 39, 467
AlwI GGATC 6 cut(s) 12, 118, 363, 404, 499, 668
AoxI GGCC 3 cut(s) 18, 115, 217
ApeKI GCWGC 2 cut(s) 68, 307
ApoI RAATTY 2 cut(s) 455, 595
AspLEI GCGC 4 cut(s) 68, 312, 314, 316
AspS9I GGNCC 3 cut(s) 115, 218, 475
AsuHPI GGTGA 5 cut(s) 148, 184, 281, 520, 679
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 39, 467
BbvI GCAGC 2 cut(s) 55, 294
BciT130I CCWGG 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 4 cut(s) 69, 229, 250, 308
BlsI GCNGC 4 cut(s) 70, 230, 251, 309
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 3 cut(s) 115, 218, 475
BmiI GGNNCC 3 cut(s) 6, 97, 220
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 21, 127
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 484
Bse118I RCCGGY 2 cut(s) 224, 266
Bse1I ACTGG 4 cut(s) 295, 378, 416, 708
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 21, 127
BseLI CCNNNNNNNGG 2 cut(s) 227, 484
BseNI ACTGG 4 cut(s) 295, 378, 416, 708
BsePI GCGCGC 2 cut(s) 310, 312
BseXI GCAGC 2 cut(s) 55, 294
Bsh1236I CGCG 4 cut(s) 14, 66, 312, 314
BshFI GGCC 3 cut(s) 20, 117, 219
BsiHKAI GWGCWC 2 cut(s) 39, 467
BsiSI CCGG 2 cut(s) 225, 267
BslI CCNNNNNNNGG 2 cut(s) 227, 484
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 3 cut(s) 20, 117, 219
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 39, 98, 467
Bsp143I GATC 6 cut(s) 4, 123, 355, 396, 491, 660
BspACI CCGC 5 cut(s) 14, 64, 222, 228, 249
BspANI GGCC 3 cut(s) 20, 117, 219
BspFNI CGCG 4 cut(s) 14, 66, 312, 314
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 3 cut(s) 6, 97, 220
BspPI GGATC 6 cut(s) 12, 118, 363, 404, 499, 668
BspQI GCTCTTC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 593
BsrFI RCCGGY 2 cut(s) 224, 266
BsrI ACTGG 4 cut(s) 295, 378, 416, 708
BssAI RCCGGY 2 cut(s) 224, 266
BssECI CCNNGG 2 cut(s) 21, 127
BssHII GCGCGC 2 cut(s) 310, 312
BssMI GATC 6 cut(s) 4, 123, 355, 396, 491, 660
BssT1I CCWWGG 2 cut(s) 21, 127
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 5 cut(s) 199, 341, 554, 580, 719
Bst6I CTCTTC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 7 cut(s) 182, 209, 226, 233, 279, 312, 314
BstDEI CTNAG 2 cut(s) 73, 709
BstFNI CGCG 4 cut(s) 14, 66, 312, 314
BstHHI GCGC 4 cut(s) 68, 312, 314, 316
BstKTI GATC 6 cut(s) 7, 126, 358, 399, 494, 663
BstMBI GATC 6 cut(s) 4, 123, 355, 396, 491, 660
BstMWI GCNNNNNNNGC 6 cut(s) 74, 181, 186, 225, 313, 374
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 4 cut(s) 14, 66, 312, 314
BstV1I GCAGC 2 cut(s) 55, 294
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 3 cut(s) 4, 123, 660
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 3 cut(s) 4, 123, 660
BsuRI GGCC 3 cut(s) 20, 117, 219
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 3 cut(s) 182, 406, 701
Cac8I GCNNGC 7 cut(s) 182, 209, 226, 233, 279, 312, 314
CciI TCATGA 1 cut(s) 358
CfoI GCGC 4 cut(s) 68, 312, 314, 316
Cfr10I RCCGGY 2 cut(s) 224, 266
Cfr13I GGNCC 3 cut(s) 115, 218, 475
CseI GACGC 1 cut(s) 20
CviAII CATG 5 cut(s) 100, 232, 359, 495, 505
DdeI CTNAG 2 cut(s) 73, 709
DpnI GATC 6 cut(s) 6, 125, 357, 398, 493, 662
DpnII GATC 6 cut(s) 4, 123, 355, 396, 491, 660
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 21, 127
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 21, 127
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 2 cut(s) 21, 127
FaeI CATG 5 cut(s) 103, 235, 362, 498, 508
FatI CATG 5 cut(s) 99, 231, 358, 494, 504
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 4 cut(s) 69, 229, 250, 308
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 4 cut(s) 69, 229, 250, 308
GlaI GCGC 4 cut(s) 67, 311, 313, 315
GluI GCNGC 4 cut(s) 69, 229, 250, 308
HaeIII GGCC 3 cut(s) 20, 117, 219
HapII CCGG 2 cut(s) 225, 267
HgaI GACGC 1 cut(s) 20
HhaI GCGC 4 cut(s) 68, 312, 314, 316
Hin1II CATG 5 cut(s) 103, 235, 362, 498, 508
Hin6I GCGC 4 cut(s) 66, 310, 312, 314
HinP1I GCGC 4 cut(s) 66, 310, 312, 314
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 3 cut(s) 56, 302, 603
HpaII CCGG 2 cut(s) 225, 267
HphI GGTGA 5 cut(s) 148, 184, 281, 520, 679
Hpy166II GTNNAC 2 cut(s) 105, 272
Hpy188I TCNGA 2 cut(s) 301, 518
Hpy188III TCNNGA 3 cut(s) 8, 359, 478
Hpy8I GTNNAC 2 cut(s) 105, 272
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 5 cut(s) 199, 341, 554, 580, 719
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 181, 186, 225, 313, 374
HpyF3I CTNAG 2 cut(s) 73, 709
Hsp92II CATG 5 cut(s) 103, 235, 362, 498, 508
HspAI GCGC 4 cut(s) 66, 310, 312, 314
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 6 cut(s) 4, 123, 355, 396, 491, 660
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 34, 101, 470
Lsp1109I GCAGC 2 cut(s) 55, 294
LweI GCATC 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 380, 548
MalI GATC 6 cut(s) 6, 125, 357, 398, 493, 662
MboI GATC 6 cut(s) 4, 123, 355, 396, 491, 660
MboII GAAGA 4 cut(s) 43, 133, 232, 429
MflI RGATCY 3 cut(s) 4, 123, 660
MhlI GDGCHC 3 cut(s) 39, 98, 467
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 4 cut(s) 455, 586, 595, 640
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 84, 283
MnlI CCTC 7 cut(s) 85, 106, 173, 223, 293, 386, 474
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 582, 639
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 225, 267
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 4 cut(s) 14, 66, 312, 314
MwoI GCNNNNNNNGC 6 cut(s) 74, 181, 186, 225, 313, 374
NaeI GCCGGC 1 cut(s) 226
NdeII GATC 6 cut(s) 4, 123, 355, 396, 491, 660
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 5 cut(s) 103, 235, 362, 498, 508
NlaIV GGNNCC 3 cut(s) 6, 97, 220
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 593
PaeI GCATGC 1 cut(s) 235
PagI TCATGA 1 cut(s) 358
PauI GCGCGC 2 cut(s) 310, 312
PciSI GCTCTTC 1 cut(s) 56
PctI GAATGC 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 56, 302, 603
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 4 cut(s) 70, 230, 251, 309
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 6, 97, 220
PspPI GGNCC 3 cut(s) 115, 218, 475
PsuI RGATCY 3 cut(s) 4, 123, 660
PteI GCGCGC 2 cut(s) 310, 312
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 582, 639
SatI GCNGC 4 cut(s) 69, 229, 250, 308
Sau3AI GATC 6 cut(s) 4, 123, 355, 396, 491, 660
Sau96I GGNCC 3 cut(s) 115, 218, 475
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 3 cut(s) 39, 98, 467
SetI ASST 5 cut(s) 110, 156, 485, 525, 655
SfaNI GCATC 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 593
SgrAI CRCCGGYG 2 cut(s) 224, 266
SinI GGWCC 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 235
Sse9I AATT 4 cut(s) 455, 586, 595, 640
SsiI CCGC 5 cut(s) 14, 64, 222, 228, 249
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 2 cut(s) 21, 127
TaaI ACNGT 5 cut(s) 199, 341, 554, 580, 719
TaqI TCGA 4 cut(s) 54, 111, 201, 593
TasI AATT 4 cut(s) 455, 586, 595, 640
TauI GCSGC 2 cut(s) 231, 252
TfiI GAWTC 3 cut(s) 56, 302, 603
Tru1I TTAA 2 cut(s) 582, 639
Tru9I TTAA 2 cut(s) 582, 639
TscAI CASTG 3 cut(s) 182, 406, 708
TseI GCWGC 2 cut(s) 68, 307
TspDTI ATGAA 2 cut(s) 493, 600
TspRI CASTG 3 cut(s) 182, 406, 708
Van91I CCANNNNNTGG 1 cut(s) 484
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 2 cut(s) 455, 595
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.