AT1G28310

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011355
Physical Location & Seq
Reverse (-)
9912203 .. 9913837
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28310.1

Sequence Viewer

Length: 936 bp
ATGCAAAGCAAGAACATGATCGTGGCTTCATCTCATCAGCAGCAACAACAACAGCAACCGCAGCAGCCACAACCGCAACTTAAATGCCCTCGTTGCGATTCTTCCAACACAAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAACCACGGCACTTTTGCAAGGCTTGCAAGAGGTACTGGACGAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGGGGTAGCTACCGGAAGAACAAACGTGTAAAGCGGCCATCAACCGCAACCACAACCACTGCCTCCACCGTCTCGACGACTAATTCTTCATCCCCTAATAACCCTCATCAGATCTCTCATTTCTCTTCCATGAATCATCATCCTTTGTTCTATGGTTTATCAGATCATATGAGCAGTTGTAATAATAATCTTCCAATGATCCCAAGCCGTTTCAGTGATTCTTCAAAGACTTGTTCATCAAGTGGTTTAGAGAGTGAGTTTCTCTCATCTGGTTTTAGCAGTCTTAGTGCTCTTGGATTAGGGCTTCCGCATCAGATGAGTCATGACCACACCATTAATGGTAGCTTCATCAACAACTCCACAACAAACAAACCCTTTCTTCTATCGGGTCTATTCGGATCCTCGATGTCTTCTTCTTCTACTCTTCTCCAGCACCCACATAAACCCATGAACAATGGTGGTGACATGTTGGGACAATCCCATCTCCAAACCCTAGCATCACTTCAAGATTTGCATGTTGGAGGTAACAATGAAGATATGAAGTACAAAGAAGGAAAGCTTGATCAGATCTCTGGGAACATCAATGGGTTCATGTCATCATCATCATCTTTGGATCCTTCAAACTACAACAACATGTGGAATAATGCAAGTGTTGTCAATGGAGCATGGCTTGATCCAACAAATAATAACGTTGGATCCTCCCTCACCTCTTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

311

Amino Acids

34.02

Weight (kDa)

9.27

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 26 - 81 2.2e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28310 AT1G28310
fragaria_vesca FvH4_3g08890 FvH4_3g08890
malus_domestica MD05G1312400.v1.1 MD10G1292100.v1.1
prunus_persica Prupe.4G050300_v2.0.a1
pyrus_communis pycom05g28840 pycom10g24410
rosa_chinensis RchiOBHm_Chr5g0008861
rosa_laevigata RLG00000031610
rosa_multiflora Rmu_sc0004677.1_g000005
rosa_roxburghii Rroxscaffold_1G00067140 Rroxscaffold_1G00067760
rosa_rugosa Rorug04G0439800
rosa_samantha Rh5AG068300 Rh5BG065100 Rh5CG076300 Rh5DG060600
rosa_wichuraiana Rw5G006400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 59, 74, 250, 261, 524
AclI AACGTT 2 cut(s) 207, 906
AclWI GGATC 8 cut(s) 409, 609, 622, 824, 837, 884, 906, 919
AcoI YGGCCR 1 cut(s) 251
AfaI GTAC 2 cut(s) 179, 761
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 3 cut(s) 241, 681, 849
AgsI TTSAA 3 cut(s) 441, 722, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 3 cut(s) 225, 561, 775
AluI AGCT 3 cut(s) 225, 561, 775
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 8 cut(s) 409, 609, 622, 824, 837, 884, 906, 919
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 40, 61, 64
AseI ATTAAT 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 689, 913
BamHI GGATCC 3 cut(s) 614, 829, 911
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 3 cut(s) 52, 73, 76
BccI CCATC 2 cut(s) 262, 705
BceAI ACGGC 2 cut(s) 167, 408
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 2 cut(s) 327, 783
BisI GCNGC 4 cut(s) 41, 62, 65, 251
BlsI GCNGC 4 cut(s) 42, 63, 66, 252
BmiI GGNNCC 3 cut(s) 616, 831, 913
BmsI GCATC 2 cut(s) 535, 722
BpiI GAAGAC 1 cut(s) 618
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 305, 355
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 3 cut(s) 52, 73, 76
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 508
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 2 cut(s) 208, 702
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 208, 702
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 508
BspACI CCGC 5 cut(s) 59, 74, 250, 261, 524
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 3 cut(s) 616, 831, 913
BspPI GGATC 8 cut(s) 409, 609, 622, 824, 837, 884, 906, 919
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 346, 645
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 200, 500
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 305, 355
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 61, 73, 93, 168
BstNSI RCATGY 3 cut(s) 685, 734, 853
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 52, 73, 76
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 5 cut(s) 327, 614, 783, 829, 911
BstYI RGATCY 5 cut(s) 327, 614, 783, 829, 911
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 305, 355
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 273, 436
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 538
Csp6I GTAC 2 cut(s) 178, 760
CviAII CATG 9 cut(s) 16, 346, 539, 664, 682, 731, 808, 850, 882
CviQI GTAC 2 cut(s) 178, 760
DdeI CTNAG 2 cut(s) 200, 500
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 346, 645
EarI CTCTTC 2 cut(s) 346, 645
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 9 cut(s) 19, 349, 542, 667, 685, 734, 811, 853, 885
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 2 cut(s) 208, 702
FatI CATG 9 cut(s) 15, 345, 538, 663, 681, 730, 807, 849, 881
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 4 cut(s) 41, 62, 65, 251
FokI GGATG 2 cut(s) 292, 342
Fsp4HI GCNGC 4 cut(s) 41, 62, 65, 251
FspBI CTAG 1 cut(s) 710
GluI GCNGC 4 cut(s) 41, 62, 65, 251
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 229
Hin1II CATG 9 cut(s) 19, 349, 542, 667, 685, 734, 811, 853, 885
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 5 cut(s) 98, 196, 349, 434, 535
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 689, 913
Hpy188I TCNGA 5 cut(s) 327, 379, 531, 614, 783
Hpy188III TCNNGA 4 cut(s) 202, 289, 539, 722
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 761, 843
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 3 cut(s) 207, 241, 906
HpyCH4V TGCA 5 cut(s) 4, 162, 171, 730, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 73, 93, 168
HpyF3I CTNAG 2 cut(s) 200, 500
HpySE526I ACGT 3 cut(s) 207, 241, 906
Hsp92II CATG 9 cut(s) 19, 349, 542, 667, 685, 734, 811, 853, 885
Ksp22I TGATCA 1 cut(s) 778
LmnI GCTCC 1 cut(s) 878
LpnPI CCDG 6 cut(s) 166, 187, 242, 471, 659, 774
Lsp1109I GCAGC 3 cut(s) 52, 73, 76
LweI GCATC 2 cut(s) 535, 722
MaeI CTAG 1 cut(s) 710
MaeII ACGT 3 cut(s) 207, 241, 906
MaeIII GTNAC 2 cut(s) 677, 740
MflI RGATCY 5 cut(s) 327, 614, 783, 829, 911
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 1 cut(s) 298
MlyI GAGTC 2 cut(s) 190, 544
MmeI TCCRAC 4 cut(s) 129, 715, 889, 917
MseI TTAA 2 cut(s) 81, 552
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 61, 73, 93, 168
NdeI CATATG 1 cut(s) 384
NlaIII CATG 9 cut(s) 19, 349, 542, 667, 685, 734, 811, 853, 885
NlaIV GGNNCC 3 cut(s) 616, 831, 913
NmuCI GTSAC 1 cut(s) 677
NspI RCATGY 3 cut(s) 685, 734, 853
PagI TCATGA 1 cut(s) 538
PciI ACATGT 2 cut(s) 681, 849
PfeI GAWTC 3 cut(s) 98, 349, 434
PkrI GCNGC 4 cut(s) 42, 63, 66, 252
PleI GAGTC 2 cut(s) 190, 543
PpsI GAGTC 2 cut(s) 190, 543
PscI ACATGT 2 cut(s) 681, 849
PshBI ATTAAT 1 cut(s) 552
Psp1406I AACGTT 2 cut(s) 207, 906
PspN4I GGNNCC 3 cut(s) 616, 831, 913
PsuI RGATCY 5 cut(s) 327, 614, 783, 829, 911
RsaI GTAC 2 cut(s) 179, 761
RsaNI GTAC 2 cut(s) 178, 760
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 81, 552
SatI GCNGC 4 cut(s) 41, 62, 65, 251
SchI GAGTC 2 cut(s) 190, 544
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 2 cut(s) 535, 722
SfcI CTRYAG 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 1 cut(s) 298
SsiI CCGC 5 cut(s) 59, 74, 250, 261, 524
SspMI CTAG 1 cut(s) 710
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 3 cut(s) 210, 244, 909
TaqI TCGA 2 cut(s) 290, 620
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 98, 349, 434
Tru1I TTAA 2 cut(s) 81, 552
Tru9I TTAA 2 cut(s) 81, 552
TscAI CASTG 2 cut(s) 280, 436
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 3 cut(s) 40, 61, 64
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 9 cut(s) 18, 294, 362, 441, 553, 680, 762, 770, 796
TspRI CASTG 2 cut(s) 280, 436
VspI ATTAAT 1 cut(s) 552
XceI RCATGY 3 cut(s) 685, 734, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.