Rh5BG065100

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011355
Physical Location & Seq
Reverse (-)
5380800 .. 5382795
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG065100.1

Sequence Viewer

Length: 1044 bp
ATGTTAATGGATCAACAGAAGATGGTACTCATCTCTTCAACTACTAACGATTGGCCACAGATCGACGACGATGATGATCAGAACCACAAGGGCGTGATGGGTTCGACAACGGCGGTAGGAGCTTCTAGATTGATGGAGAAACCGGGCCAAGAGCAACTTCAACAGCAGCAACAAGCCCTTAAATGTCCTCGATGTGATTCTTCCAACACCAAGTTCTGTTACTACAACAATTACAGCTTGTCTCAGCCCAGACACTTCTGCAAGGCCTGCAAGCGCTACTGGACCAGAGGCGGCACGCTTAGAAATGTTCCGGTCGGCGGTGGGTGTAGAAAGAACAAGCGCGTGAAAAGACCTAGCTCAAGCTCAGCCGTGGATAATGGAGCTTCTTCTTCTGCTTCTTCGGCTCCGAACAGTGGTAACTCAAACCCGAATCCCAACACACAACAAAACCATCCTCAGATCGACTTGGCCTCGAACTCGAATCATCATATGAATCCGCTGTTTTACGGGTTAGGTAGTAACCAACCTGATCACATGGGGATTAATCCGTTTACTACATCCGGGTTTGATCAGTTCAGTGCTCTCGGGTTAGGGTTTGGTGATCAAAGGTTTAATCCGGCGGCAACCAGCAAGCAAATCCAAGATCTTGTGGCCGCGAATTCGCTTCATTCTTCCAATCATTCCATTTTTAATTCCACATCTTATAGCACAGCTCCAACTATGGCCTCTGTTCTCGCTTCCAAGTTCATCAACGGTGGGTTTAAGGATGTCAGAGGGAATAATAATCAGTATTTCCAGAACTTGCTGCCGTTTGAGGATCTTCAGATAGCAGCAGCTGGCAACGGCGGCGGCGAGGCGGTGAAGGAAGTGAAAGTAGAAGATGGTGGACAAAGCAGGATGGGGTGGAGTACTAATCACCAGGCTAATACAGAGCAAATGGGACTCTCATCGGATCCTACTCTTTACTGGAGCTCGTCGAATCTCGGAGCGAATAATTGGCATGATCCGGCGAATCTTGGGTCGTCGGTCTCTTCTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

347

Amino Acids

37.55

Weight (kDa)

7.68

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 58 - 114 5e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28310 AT1G28310
fragaria_vesca FvH4_3g08890 FvH4_3g08890
malus_domestica MD05G1312400.v1.1 MD10G1292100.v1.1
prunus_persica Prupe.4G050300_v2.0.a1
pyrus_communis pycom05g28840 pycom10g24410
rosa_chinensis RchiOBHm_Chr5g0008861
rosa_laevigata RLG00000031610
rosa_multiflora Rmu_sc0004677.1_g000005
rosa_roxburghii Rroxscaffold_1G00067140 Rroxscaffold_1G00067760
rosa_rugosa Rorug04G0439800
rosa_samantha Rh5AG068300 Rh5BG065100 Rh5CG076300 Rh5DG060600
rosa_wichuraiana Rw5G006400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 342, 656
AciI CCGC 9 cut(s) 113, 291, 318, 497, 620, 654, 846, 849, 857
AclWI GGATC 5 cut(s) 18, 825, 947, 960, 998
AcoI YGGCCR 2 cut(s) 53, 651
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 806
AfaI GTAC 2 cut(s) 27, 910
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 317, 413
AgsI TTSAA 2 cut(s) 39, 161
AjnI CCWGG 1 cut(s) 918
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 197, 229
AluBI AGCT 8 cut(s) 122, 237, 357, 363, 383, 713, 836, 972
AluI AGCT 8 cut(s) 122, 237, 357, 363, 383, 713, 836, 972
Alw21I GWGCWC 2 cut(s) 583, 974
Alw26I GTCTC 2 cut(s) 246, 1033
AlwI GGATC 5 cut(s) 18, 825, 947, 960, 998
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 584
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 6 cut(s) 53, 145, 264, 468, 651, 723
ApeKI GCWGC 4 cut(s) 166, 805, 830, 833
ApoI RAATTY 1 cut(s) 658
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
AseI ATTAAT 1 cut(s) 543
AspLEI GCGC 2 cut(s) 276, 342
AspS9I GGNCC 2 cut(s) 145, 282
AsuC2I CCSGG 2 cut(s) 144, 562
AsuHPI GGTGA 3 cut(s) 611, 871, 908
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 282
BalI TGGCCA 1 cut(s) 55
BamHI GGATCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 974
Bbv12I GWGCWC 2 cut(s) 583, 974
BbvI GCAGC 4 cut(s) 178, 792, 842, 845
BccI CCATC 6 cut(s) 16, 91, 127, 459, 875, 892
BceAI ACGGC 4 cut(s) 126, 353, 793, 859
BciT130I CCWGG 1 cut(s) 920
BclI TGATCA 4 cut(s) 76, 529, 568, 601
BcnI CCSGG 2 cut(s) 144, 562
BcoDI GTCTC 2 cut(s) 246, 1033
BfaI CTAG 2 cut(s) 126, 354
BfoI RGCGCY 1 cut(s) 277
BglII AGATCT 1 cut(s) 643
BisI GCNGC 9 cut(s) 167, 292, 621, 654, 806, 831, 834, 847, 850
BlpI GCTNAGC 1 cut(s) 364
BlsI GCNGC 9 cut(s) 168, 293, 622, 655, 807, 832, 835, 848, 851
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 3 cut(s) 144, 562, 920
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 145, 282
BmiI GGNNCC 2 cut(s) 405, 954
BmrFI CCNGG 3 cut(s) 144, 562, 920
BpmI CTGGAG 1 cut(s) 988
Bpu1102I GCTNAGC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 343
BpuMI CCSGG 2 cut(s) 144, 562
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 1033
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 413
Bse1I ACTGG 2 cut(s) 284, 971
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 920
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 4 cut(s) 451, 557, 772, 903
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 317, 413
BseMII CTCAG 3 cut(s) 257, 378, 470
BseNI ACTGG 2 cut(s) 284, 971
BseXI GCAGC 4 cut(s) 178, 792, 842, 845
Bsh1236I CGCG 2 cut(s) 342, 656
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 6 cut(s) 55, 147, 266, 470, 653, 725
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 583, 974
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 5 cut(s) 143, 311, 561, 617, 1007
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 2 cut(s) 317, 413
BsmAI GTCTC 2 cut(s) 246, 1033
BsmFI GGGAC 1 cut(s) 954
BsnI GGCC 6 cut(s) 55, 147, 266, 470, 653, 725
Bso31I GGTCTC 1 cut(s) 1033
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 583, 974
Bsp1720I GCTNAGC 1 cut(s) 364
BspACI CCGC 9 cut(s) 113, 291, 318, 497, 620, 654, 846, 849, 857
BspANI GGCC 6 cut(s) 55, 147, 266, 470, 653, 725
BspCNI CTCAG 3 cut(s) 256, 377, 469
BspFNI CGCG 2 cut(s) 342, 656
BspLI GGNNCC 2 cut(s) 405, 954
BspPI GGATC 5 cut(s) 18, 825, 947, 960, 998
BspTNI GGTCTC 1 cut(s) 1033
BsrI ACTGG 2 cut(s) 284, 971
BssECI CCNNGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 2 cut(s) 413, 755
Bst6I CTCTTC 2 cut(s) 40, 1036
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 268, 272, 296, 632, 838
BstDEI CTNAG 4 cut(s) 243, 299, 364, 456
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 451, 557, 772, 903
BstFNI CGCG 2 cut(s) 342, 656
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 276, 342
BstMAI GTCTC 2 cut(s) 246, 1033
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 119, 267, 401, 846
BstNI CCWGG 1 cut(s) 920
BstSCI CCNGG 3 cut(s) 142, 560, 918
BstUI CGCG 2 cut(s) 342, 656
BstV1I GCAGC 4 cut(s) 178, 792, 842, 845
BstX2I RGATCY 3 cut(s) 643, 817, 952
BstYI RGATCY 3 cut(s) 643, 817, 952
BsuRI GGCC 6 cut(s) 55, 147, 266, 470, 653, 725
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 4 cut(s) 451, 557, 772, 903
BtsIMutI CAGTG 2 cut(s) 418, 583
Cac8I GCNNGC 5 cut(s) 268, 272, 296, 632, 838
CaiI CAGNNNCTG 1 cut(s) 836
CfoI GCGC 2 cut(s) 276, 342
Cfr13I GGNCC 2 cut(s) 145, 282
Csp6I GTAC 2 cut(s) 26, 909
CviAII CATG 2 cut(s) 535, 1001
CviQI GTAC 2 cut(s) 26, 909
DdeI CTNAG 4 cut(s) 243, 299, 364, 456
EaeI YGGCCR 2 cut(s) 53, 651
Eam1104I CTCTTC 2 cut(s) 40, 1036
EarI CTCTTC 2 cut(s) 40, 1036
Ecl136II GAGCTC 1 cut(s) 972
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 974
Eco31I GGTCTC 1 cut(s) 1033
Eco47I GGWCC 1 cut(s) 282
Eco47III AGCGCT 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 972
Eco57I CTGAAG 1 cut(s) 806
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 972
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 918
EcoT38I GRGCYC 1 cut(s) 974
FaeI CATG 2 cut(s) 538, 1004
FaiI YATR 6 cut(s) 489, 491, 536, 705, 722, 1002
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 954
FatI CATG 2 cut(s) 534, 1000
FauNDI CATATG 1 cut(s) 489
FbaI TGATCA 4 cut(s) 76, 529, 568, 601
Fnu4HI GCNGC 9 cut(s) 167, 292, 621, 654, 806, 831, 834, 847, 850
FokI GGATG 4 cut(s) 438, 544, 779, 910
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 9 cut(s) 167, 292, 621, 654, 806, 831, 834, 847, 850
FspBI CTAG 2 cut(s) 126, 354
GlaI GCGC 2 cut(s) 275, 341
GluI GCNGC 9 cut(s) 167, 292, 621, 654, 806, 831, 834, 847, 850
GsuI CTGGAG 1 cut(s) 988
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 6 cut(s) 55, 147, 266, 470, 653, 725
HapII CCGG 5 cut(s) 143, 311, 561, 617, 1007
HhaI GCGC 2 cut(s) 276, 342
Hin1II CATG 2 cut(s) 538, 1004
Hin6I GCGC 2 cut(s) 274, 340
HinP1I GCGC 2 cut(s) 274, 340
HinfI GANTC 7 cut(s) 197, 430, 481, 493, 942, 979, 1012
HpaII CCGG 5 cut(s) 143, 311, 561, 617, 1007
HphI GGTGA 3 cut(s) 611, 871, 908
Hpy166II GTNNAC 2 cut(s) 552, 887
Hpy188I TCNGA 8 cut(s) 81, 408, 459, 773, 825, 952, 986, 1038
Hpy188III TCNNGA 2 cut(s) 126, 796
Hpy8I GTNNAC 2 cut(s) 552, 887
Hpy99I CGWCG 4 cut(s) 68, 71, 979, 1027
HpyAV CCTTC 1 cut(s) 856
HpyCH4III ACNGT 2 cut(s) 413, 755
HpyCH4V TGCA 2 cut(s) 261, 270
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 267, 401, 846
HpyF3I CTNAG 4 cut(s) 243, 299, 364, 456
Hsp92II CATG 2 cut(s) 538, 1004
HspAI GCGC 2 cut(s) 274, 340
Ksp22I TGATCA 4 cut(s) 76, 529, 568, 601
LmnI GCTCC 6 cut(s) 119, 380, 409, 718, 969, 986
Lsp1109I GCAGC 4 cut(s) 178, 792, 842, 845
MaeI CTAG 2 cut(s) 126, 354
MaeIII GTNAC 3 cut(s) 218, 416, 518
MflI RGATCY 3 cut(s) 643, 817, 952
MhlI GDGCHC 2 cut(s) 583, 974
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 4 cut(s) 229, 658, 691, 994
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 936
MmeI TCCRAC 2 cut(s) 228, 740
MnlI CCTC 8 cut(s) 198, 281, 465, 481, 736, 767, 808, 847
Mox20I TGGCCA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 55
MseI TTAA 6 cut(s) 5, 180, 543, 612, 690, 762
Msp20I TGGCCA 1 cut(s) 55
MspA1I CMGCKG 2 cut(s) 499, 836
MspI CCGG 5 cut(s) 143, 311, 561, 617, 1007
MspR9I CCNGG 3 cut(s) 144, 562, 920
MvaI CCWGG 1 cut(s) 920
MvnI CGCG 2 cut(s) 342, 656
MwoI GCNNNNNNNGC 4 cut(s) 119, 267, 401, 846
NciI CCSGG 2 cut(s) 144, 562
NdeI CATATG 1 cut(s) 489
NlaIII CATG 2 cut(s) 538, 1004
NlaIV GGNNCC 2 cut(s) 405, 954
PceI AGGCCT 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PfeI GAWTC 6 cut(s) 197, 430, 481, 493, 979, 1012
PkrI GCNGC 9 cut(s) 168, 293, 622, 655, 807, 832, 835, 848, 851
PleI GAGTC 1 cut(s) 936
PpsI GAGTC 1 cut(s) 936
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 974
Psp6I CCWGG 1 cut(s) 918
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 2 cut(s) 405, 954
PspPI GGNCC 2 cut(s) 145, 282
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 3 cut(s) 643, 817, 952
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 2 cut(s) 27, 910
RsaNI GTAC 2 cut(s) 26, 909
SacI GAGCTC 1 cut(s) 974
SaqAI TTAA 6 cut(s) 5, 180, 543, 612, 690, 762
SatI GCNGC 9 cut(s) 167, 292, 621, 654, 806, 831, 834, 847, 850
Sau96I GGNCC 2 cut(s) 145, 282
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 1 cut(s) 936
ScrFI CCNGG 3 cut(s) 144, 562, 920
SduI GDGCHC 2 cut(s) 583, 974
SinI GGWCC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 4 cut(s) 229, 658, 691, 994
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 9 cut(s) 113, 291, 318, 497, 620, 654, 846, 849, 857
SspMI CTAG 2 cut(s) 126, 354
SstI GAGCTC 1 cut(s) 974
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 142, 560, 918
TaaI ACNGT 2 cut(s) 413, 755
TaqI TCGA 7 cut(s) 63, 104, 190, 462, 473, 479, 977
TaqII GACCGA 1 cut(s) 1015
TasI AATT 4 cut(s) 229, 658, 691, 994
TatI WGTACW 1 cut(s) 908
TauI GCSGC 5 cut(s) 294, 623, 656, 849, 852
TfiI GAWTC 6 cut(s) 197, 430, 481, 493, 979, 1012
Tru1I TTAA 6 cut(s) 5, 180, 543, 612, 690, 762
Tru9I TTAA 6 cut(s) 5, 180, 543, 612, 690, 762
TscAI CASTG 2 cut(s) 418, 583
TseI GCWGC 4 cut(s) 166, 805, 830, 833
TspDTI ATGAA 3 cut(s) 506, 656, 736
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 2 cut(s) 418, 583
VpaK11BI GGWCC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 1 cut(s) 658
XbaI TCTAGA 1 cut(s) 125
XspI CTAG 2 cut(s) 126, 354
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.