Prupe.4G050300_v2.0.a1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011355
Physical Location & Seq
Reverse (-)
2400145 .. 2406312
6168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G050300.1

Sequence Viewer

Length: 1131 bp
ATGTTGAGCAACTGTGATCATGAGAAGATGGTACTCATCTCTTCAACTACTAACGAATGGCCACAGATGCAGCAGCAAGATAATATTCAAATCGATGATCACCATCAAAAGGGCTTGAACAATAACATGTCTTCATCAACATCATCACCAGCTACTCGGATAATGGAGAAACCAGGCCAAGAGCAGCTCCAACTACAGCAACAAGCCCTCAAGTGTCCACGCTGCGATTCATCAAACACCAAGTTCTGCTACTATAACAACTACAGCTTGTCTCAGCCAAGGCACTTCTGCAAGGCCTGCAAGCGCTACTGGACCAGAGGGGGAACTCTCAGGAACGTTCCGGTCGGCGGTGGGTGTAGAAAGAACAAGCGTGTGAAGAGGCCTGGCTCATCATCGTCGTCAGCCATGGATGGAGCTTCTTCTTCTTCTTCTTCAATTCCAAGCAACACTGCTAACAATAATAATAGTAATTCAAACCCTCCTTCACAACCATCCCAGATAGATCAGATCAACCCAATGTTTTATGGGTTGCCTAGTAACCCTTTTATGGACAGTCCAAGTTCCGCTTCTGGGTTTGATCTTCATCAGTTGAATCATCATCATGCTCAGCTGGGGTTAGGGTTTTCATCAGCAGGTACTTTCATGTCTGGTGATAATTATCGAAACAGGTTTAATCCCACATCGAATTCATCACTTCCTTCTTCCAATTATAGCTCCATTTTTAGTACTTCTCCATCTACTACCACCACCACTCCAACTATGGCTTCTGTGCTTGCTTCTAAGTTCCTCAATGGGGGTAGTTTCAAAGATATTCAAGCTAGAGGGCCTAATCATAACCAGTATTTCCAGTCCTTACTACCCTTTGAAGACCTTCATATAGCAGCCGGCAATACCGGTGAGGCTGGTGGTGCCGCGAAAGATGTGAAAGTTGAAGATCAGGCTGGTCAGAACAGGTTGGAGTGGAATAATAATAGCAACAACAATAATGTGAATGGTAATATGAATTGCCAGAATCAGATGACAGAGCAAATGGGGCTCTCGGATCCCAGTCTCTACTGGAGCTCAACGACTCTTGGTGCTAATTGGCATGATCCATCAAATCTTGGGTCCTCAGTCTCTTCTCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

377

Amino Acids

40.99

Weight (kDa)

8.09

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28310 AT1G28310
fragaria_vesca FvH4_3g08890 FvH4_3g08890
malus_domestica MD05G1312400.v1.1 MD10G1292100.v1.1
prunus_persica Prupe.4G050300_v2.0.a1
pyrus_communis pycom05g28840 pycom10g24410
rosa_chinensis RchiOBHm_Chr5g0008861
rosa_laevigata RLG00000031610
rosa_multiflora Rmu_sc0004677.1_g000005
rosa_roxburghii Rroxscaffold_1G00067140 Rroxscaffold_1G00067760
rosa_rugosa Rorug04G0439800
rosa_samantha Rh5AG068300 Rh5BG065100 Rh5CG076300 Rh5DG060600
rosa_wichuraiana Rw5G006400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 908
AccII CGCG 1 cut(s) 914
AciI CCGC 3 cut(s) 348, 564, 912
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 1037, 1050, 1085
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 1 cut(s) 685
AfaI GTAC 3 cut(s) 33, 637, 727
AfeI AGCGCT 1 cut(s) 305
AfiI CCNNNNNNNGG 5 cut(s) 109, 347, 547, 570, 793
AflIII ACRYGT 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 893
AjnI CCWGG 2 cut(s) 172, 382
AjuI GAANNNNNNNTTGG 4 cut(s) 550, 582, 748, 780
AluBI AGCT 8 cut(s) 152, 187, 267, 416, 610, 714, 818, 1062
AluI AGCT 8 cut(s) 152, 187, 267, 416, 610, 714, 818, 1062
Alw21I GWGCWC 1 cut(s) 1064
Alw26I GTCTC 3 cut(s) 276, 1055, 1120
AlwI GGATC 3 cut(s) 1037, 1050, 1085
Aor51HI AGCGCT 1 cut(s) 305
AoxI GGCC 5 cut(s) 59, 175, 294, 380, 824
ApeKI GCWGC 5 cut(s) 70, 73, 184, 222, 881
ApoI RAATTY 1 cut(s) 685
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
AsiGI ACCGGT 1 cut(s) 893
Asp700I GAANNNNTTC 1 cut(s) 870
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 312, 824, 1107
AsuHPI GGTGA 4 cut(s) 92, 138, 662, 908
AvaII GGWCC 2 cut(s) 312, 1107
BalI TGGCCA 1 cut(s) 61
BamHI GGATCC 1 cut(s) 1042
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 2 cut(s) 1038, 1064
BbsI GAAGAC 2 cut(s) 123, 873
Bbv12I GWGCWC 1 cut(s) 1064
BbvI GCAGC 5 cut(s) 82, 85, 196, 209, 893
BccI CCATC 6 cut(s) 22, 111, 404, 499, 742, 1102
BciT130I CCWGG 2 cut(s) 174, 384
BclI TGATCA 2 cut(s) 16, 97
BcoDI GTCTC 3 cut(s) 276, 1055, 1120
BfaI CTAG 3 cut(s) 534, 819, 1129
BfmI CTRYAG 2 cut(s) 194, 262
BfoI RGCGCY 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 623
BisI GCNGC 6 cut(s) 71, 74, 185, 223, 882, 912
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 6 cut(s) 72, 75, 186, 224, 883, 913
BmcAI AGTACT 1 cut(s) 727
Bme1390I CCNGG 2 cut(s) 174, 384
Bme18I GGWCC 2 cut(s) 312, 1107
BmgT120I GGNCC 3 cut(s) 312, 824, 1107
BmiI GGNNCC 3 cut(s) 910, 1044, 1108
BmrFI CCNGG 2 cut(s) 174, 384
BmrI ACTGGG 1 cut(s) 1041
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 1041
BpiI GAAGAC 2 cut(s) 123, 873
BpmI CTGGAG 1 cut(s) 1078
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 93
BsaBI GATNNNNATC 3 cut(s) 102, 582, 657
BsaJI CCNNGG 2 cut(s) 278, 405
BsaWI WCCGGW 2 cut(s) 340, 893
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 347, 547, 570, 793
Bse118I RCCGGY 2 cut(s) 884, 893
Bse1I ACTGG 5 cut(s) 314, 838, 847, 1047, 1061
Bse8I GATNNNNATC 3 cut(s) 102, 582, 657
BseBI CCWGG 2 cut(s) 174, 384
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 278, 405
BseGI GGATG 2 cut(s) 415, 491
BseJI GATNNNNATC 3 cut(s) 102, 582, 657
BseLI CCNNNNNNNGG 5 cut(s) 109, 347, 547, 570, 793
BseMII CTCAG 4 cut(s) 287, 343, 620, 1125
BseNI ACTGG 5 cut(s) 314, 838, 847, 1047, 1061
BseXI GCAGC 5 cut(s) 82, 85, 196, 209, 893
BseYI CCCAGC 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 914
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 5 cut(s) 61, 177, 296, 382, 826
BshNI GGYRCC 1 cut(s) 908
BshTI ACCGGT 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 1064
BsiSI CCGG 3 cut(s) 341, 885, 894
BslI CCNNNNNNNGG 5 cut(s) 109, 347, 547, 570, 793
BsmAI GTCTC 3 cut(s) 276, 1055, 1120
BsnI GGCC 5 cut(s) 61, 177, 296, 382, 826
Bsp1286I GDGCHC 2 cut(s) 1038, 1064
Bsp143I GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
Bsp1720I GCTNAGC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 3 cut(s) 348, 564, 912
BspANI GGCC 5 cut(s) 61, 177, 296, 382, 826
BspCNI CTCAG 4 cut(s) 286, 342, 619, 1124
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 1 cut(s) 914
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 3 cut(s) 910, 1044, 1108
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 3 cut(s) 1037, 1050, 1085
BspT107I GGYRCC 1 cut(s) 908
BsrFI RCCGGY 2 cut(s) 884, 893
BsrI ACTGG 5 cut(s) 314, 838, 847, 1047, 1061
BssAI RCCGGY 2 cut(s) 884, 893
BssECI CCNNGG 2 cut(s) 278, 405
BssMI GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
BssT1I CCWWGG 2 cut(s) 278, 405
Bst2UI CCWGG 2 cut(s) 174, 384
Bst4CI ACNGT 2 cut(s) 14, 554
Bst6I CTCTTC 3 cut(s) 46, 371, 1123
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 298, 302, 774, 886
BstDEI CTNAG 5 cut(s) 273, 329, 606, 780, 1111
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 415, 491
BstFNI CGCG 1 cut(s) 914
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 9 cut(s) 19, 100, 505, 510, 580, 937, 1045, 1093, 1128
BstMAI GTCTC 3 cut(s) 276, 1055, 1120
BstMBI GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 67, 297, 908, 1033
BstNI CCWGG 2 cut(s) 174, 384
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 172, 382
BstSFI CTRYAG 2 cut(s) 194, 262
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 5 cut(s) 82, 85, 196, 209, 893
BstV2I GAAGAC 2 cut(s) 123, 873
BstX2I RGATCY 1 cut(s) 1042
BstYI RGATCY 1 cut(s) 1042
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 5 cut(s) 61, 177, 296, 382, 826
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 2 cut(s) 415, 491
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 4 cut(s) 298, 302, 774, 886
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 2 cut(s) 884, 893
Cfr13I GGNCC 3 cut(s) 312, 824, 1107
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 3 cut(s) 32, 636, 726
CspAI ACCGGT 1 cut(s) 893
CviAII CATG 6 cut(s) 20, 127, 406, 602, 643, 1088
CviQI GTAC 3 cut(s) 32, 636, 726
DdeI CTNAG 5 cut(s) 273, 329, 606, 780, 1111
DpnI GATC 9 cut(s) 18, 99, 504, 509, 579, 936, 1044, 1092, 1127
DpnII GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 46, 371, 1123
EarI CTCTTC 3 cut(s) 46, 371, 1123
Ecl136II GAGCTC 1 cut(s) 1062
Eco130I CCWWGG 2 cut(s) 278, 405
Eco147I AGGCCT 2 cut(s) 296, 382
Eco24I GRGCYC 2 cut(s) 1038, 1064
Eco47I GGWCC 2 cut(s) 312, 1107
Eco47III AGCGCT 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 1062
EcoICRI GAGCTC 1 cut(s) 1062
EcoO109I RGGNCCY 2 cut(s) 824, 1107
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 172, 382
EcoT14I CCWWGG 2 cut(s) 278, 405
EcoT38I GRGCYC 2 cut(s) 1038, 1064
ErhI CCWWGG 2 cut(s) 278, 405
FaeI CATG 6 cut(s) 23, 130, 409, 605, 646, 1091
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FatI CATG 6 cut(s) 19, 126, 405, 601, 642, 1087
FbaI TGATCA 2 cut(s) 16, 97
Fnu4HI GCNGC 6 cut(s) 71, 74, 185, 223, 882, 912
FokI GGATG 2 cut(s) 422, 478
FriOI GRGCYC 2 cut(s) 1038, 1064
Fsp4HI GCNGC 6 cut(s) 71, 74, 185, 223, 882, 912
FspBI CTAG 3 cut(s) 534, 819, 1129
GlaI GCGC 1 cut(s) 305
GluI GCNGC 6 cut(s) 71, 74, 185, 223, 882, 912
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 1078
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 5 cut(s) 61, 177, 296, 382, 826
HapII CCGG 3 cut(s) 341, 885, 894
HhaI GCGC 1 cut(s) 306
Hin1II CATG 6 cut(s) 23, 130, 409, 605, 646, 1091
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 4 cut(s) 227, 592, 1012, 1069
HpaII CCGG 3 cut(s) 341, 885, 894
HphI GGTGA 4 cut(s) 92, 138, 662, 908
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 6 cut(s) 159, 507, 948, 1017, 1042, 1125
Hpy188III TCNNGA 2 cut(s) 20, 331
Hpy8I GTNNAC 1 cut(s) 218
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 3 cut(s) 492, 708, 881
HpyCH4III ACNGT 2 cut(s) 14, 554
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 70, 291, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 297, 908, 1033
HpyF3I CTNAG 5 cut(s) 273, 329, 606, 780, 1111
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 6 cut(s) 23, 130, 409, 605, 646, 1091
HspAI GCGC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 884
KroNI GCCGGC 1 cut(s) 886
Ksp22I TGATCA 2 cut(s) 16, 97
Kzo9I GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
LmnI GCTCC 4 cut(s) 192, 413, 719, 1059
Lsp1109I GCAGC 5 cut(s) 82, 85, 196, 209, 893
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 534, 819, 1129
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 536
MalI GATC 9 cut(s) 18, 99, 504, 509, 579, 936, 1044, 1092, 1127
MboI GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 2 cut(s) 1038, 1064
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 7 cut(s) 435, 469, 655, 685, 706, 1003, 1081
MluNI TGGCCA 1 cut(s) 61
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 3 cut(s) 214, 779, 936
MnlI CCTC 8 cut(s) 218, 311, 372, 489, 797, 815, 892, 1120
Mox20I TGGCCA 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 870
MscI TGGCCA 1 cut(s) 61
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 3 cut(s) 341, 885, 894
MspR9I CCNGG 2 cut(s) 174, 384
MvaI CCWGG 2 cut(s) 174, 384
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 4 cut(s) 67, 297, 908, 1033
NaeI GCCGGC 1 cut(s) 886
NcoI CCATGG 1 cut(s) 405
NdeII GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
NgoMIV GCCGGC 1 cut(s) 884
NlaIII CATG 6 cut(s) 23, 130, 409, 605, 646, 1091
NlaIV GGNNCC 3 cut(s) 910, 1044, 1108
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 19
PceI AGGCCT 2 cut(s) 296, 382
PciI ACATGT 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 870
PfeI GAWTC 3 cut(s) 227, 592, 1012
PinAI ACCGGT 1 cut(s) 893
PkrI GCNGC 6 cut(s) 72, 75, 186, 224, 883, 913
PleI GAGTC 1 cut(s) 1063
PpsI GAGTC 1 cut(s) 1063
PpuMI RGGWCCY 1 cut(s) 1107
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 1064
Psp1406I AACGTT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 1107
Psp6I CCWGG 2 cut(s) 172, 382
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 2 cut(s) 172, 382
PspN4I GGNNCC 3 cut(s) 910, 1044, 1108
PspPI GGNCC 3 cut(s) 312, 824, 1107
PspPPI RGGWCCY 1 cut(s) 1107
PsuI RGATCY 1 cut(s) 1042
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 3 cut(s) 33, 637, 727
RsaNI GTAC 3 cut(s) 32, 636, 726
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 1064
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 6 cut(s) 71, 74, 185, 223, 882, 912
Sau3AI GATC 9 cut(s) 16, 97, 502, 507, 577, 934, 1042, 1090, 1125
Sau96I GGNCC 3 cut(s) 312, 824, 1107
ScaI AGTACT 1 cut(s) 727
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 2 cut(s) 174, 384
SduI GDGCHC 2 cut(s) 1038, 1064
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 194, 262
SinI GGWCC 2 cut(s) 312, 1107
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 7 cut(s) 435, 469, 655, 685, 706, 1003, 1081
SseBI AGGCCT 2 cut(s) 296, 382
SsiI CCGC 3 cut(s) 348, 564, 912
SspI AATATT 1 cut(s) 85
SspMI CTAG 3 cut(s) 534, 819, 1129
SstI GAGCTC 1 cut(s) 1064
StuI AGGCCT 2 cut(s) 296, 382
StyD4I CCNGG 2 cut(s) 172, 382
StyI CCWWGG 2 cut(s) 278, 405
TaaI ACNGT 2 cut(s) 14, 554
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 93, 661, 683
TasI AATT 7 cut(s) 435, 469, 655, 685, 706, 1003, 1081
TatI WGTACW 1 cut(s) 725
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 3 cut(s) 227, 592, 1012
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 454
TseI GCWGC 5 cut(s) 70, 73, 184, 222, 881
TspDTI ATGAA 8 cut(s) 123, 219, 572, 615, 631, 678, 863, 1016
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 312, 1107
XapI RAATTY 1 cut(s) 685
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 3 cut(s) 534, 819, 1129
ZrmI AGTACT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.