FvH4_3g08890

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011355
Physical Location & Seq
Forward (+)
5190457 .. 5192441
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08890.t1

Sequence Viewer

Length: 924 bp
ATGGGTTCAACAACGGCGGTAGGAGCTTCTAGATTGATGGAGAAACCGGGACAAGAGCAACTTCAACAGCAGCAGCAAGCCCTGAAATGTCCCCGATGTGATTCTTCCAACACCAAGTTCTGTTACTACAACAACTACAGCTTGTCTCAGCCTAGACACTTCTGCAAGGCCTGCAAGCGCTACTGGACCAGAGGCGGCACGCTTAGAAATGTTCCGGTCGGCGGTGGGTGTAGAAAGAACAAGCGCGTGAAAAGACCTAGCTCCACCTCAGCCGTCGATAATGGAGCTTCTTCTTCTGCTTCTTCGGCTCCCAACAGTGGTAATAACTCAAACCCGAATCCTCAGATCGACTTGGCCTCGAACTCGAATCATCATCATATGAATCCACTGTTCTACCAACCTGATCACATGGGGATTAATCCGTTTACTACATCCGGGTTTGATCAGTTCAGTGCTCTCGGGTTAGGGTTTGGTGATCAGAGGTTTAATCCGGCGGCGACGAGCAAGCAAATCCAAGATCTTGTGGCCGCTAATTCACTTCATTCTTCCAATCATTCCATTTTTAGTTCCACATCTTATAGCACAGCTCCAACCATGGCTTCTGTTCTCGCTTCCAAGTTCATCAACGGTGGGTTTAAAGATGTTAGAGGGAACAATAATCAGTATTTTCAGAACTTGCTGCCCTTTGAGGATCTTCAGATAGCAGGAGCTGGCAACGGCGGCGGCGGCGGCGAGGCGGTGAAGGAAGTGAAAGTAGAAGATGGTGGACAAAGCAGGATGGGGTGGAGTACTAATCACCAGGCTAACACAGAGCAAATGGGATTCTCATCGGATCCTACTCTTTACTGGAGCTCGTCGAATCTCGGAGCGAATAATTGGCATGATCCGGCAAATCTTGGGTCGTCGGTGTCTTCTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

308

Amino Acids

32.97

Weight (kDa)

9.01

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 26 - 82 4.1e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28310 AT1G28310
fragaria_vesca FvH4_3g08890 FvH4_3g08890
malus_domestica MD05G1312400.v1.1 MD10G1292100.v1.1
prunus_persica Prupe.4G050300_v2.0.a1
pyrus_communis pycom05g28840 pycom10g24410
rosa_chinensis RchiOBHm_Chr5g0008861
rosa_laevigata RLG00000031610
rosa_multiflora Rmu_sc0004677.1_g000005
rosa_roxburghii Rroxscaffold_1G00067140 Rroxscaffold_1G00067760
rosa_rugosa Rorug04G0439800
rosa_samantha Rh5AG068300 Rh5BG065100 Rh5CG076300 Rh5DG060600
rosa_wichuraiana Rw5G006400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AclWI GGATC 4 cut(s) 699, 827, 840, 878
AcoI YGGCCR 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 680
AfaI GTAC 1 cut(s) 790
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 221, 317
AgsI TTSAA 2 cut(s) 9, 65
AjnI CCWGG 1 cut(s) 798
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 583, 615
AluBI AGCT 7 cut(s) 26, 141, 261, 287, 587, 710, 852
AluI AGCT 7 cut(s) 26, 141, 261, 287, 587, 710, 852
Alw21I GWGCWC 2 cut(s) 457, 854
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 4 cut(s) 699, 827, 840, 878
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 458
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 3 cut(s) 168, 354, 525
ApeKI GCWGC 3 cut(s) 70, 73, 679
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 2 cut(s) 180, 246
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 2 cut(s) 48, 436
AsuHPI GGTGA 3 cut(s) 485, 751, 788
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 832
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 457, 854
BbvCI CCTCAGC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 82, 85, 666
BccI CCATC 3 cut(s) 31, 755, 772
BceAI ACGGC 3 cut(s) 30, 257, 733
BciT130I CCWGG 1 cut(s) 800
BclI TGATCA 3 cut(s) 403, 442, 475
BcnI CCSGG 2 cut(s) 48, 436
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 30, 153, 258
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 181
BglII AGATCT 1 cut(s) 517
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 3 cut(s) 48, 436, 800
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 309, 834
BmrFI CCNGG 3 cut(s) 48, 436, 800
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 1 cut(s) 868
Bpu10I CCTNAGC 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 48, 436
BsaBI GATNNNNATC 1 cut(s) 826
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 317
Bse1I ACTGG 2 cut(s) 188, 851
Bse8I GATNNNNATC 1 cut(s) 826
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 2 cut(s) 431, 783
BseJI GATNNNNATC 1 cut(s) 826
BseLI CCNNNNNNNGG 2 cut(s) 221, 317
BseMII CTCAG 3 cut(s) 161, 282, 356
BseNI ACTGG 2 cut(s) 188, 851
BseXI GCAGC 3 cut(s) 82, 85, 666
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 170, 356, 527
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 457, 854
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 5 cut(s) 47, 215, 435, 491, 887
BslFI GGGAC 2 cut(s) 63, 75
BslI CCNNNNNNNGG 2 cut(s) 221, 317
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 63, 75
BsnI GGCC 3 cut(s) 170, 356, 527
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 457, 854
Bsp143I GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
Bsp19I CCATGG 1 cut(s) 594
BspANI GGCC 3 cut(s) 170, 356, 527
BspCNI CTCAG 3 cut(s) 160, 281, 355
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 309, 834
BspPI GGATC 4 cut(s) 699, 827, 840, 878
BsrI ACTGG 2 cut(s) 188, 851
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 3 cut(s) 317, 390, 629
BstAPI GCANNNNNTGC 1 cut(s) 171
BstC8I GCNNGC 6 cut(s) 78, 172, 176, 200, 506, 712
BstDEI CTNAG 4 cut(s) 147, 203, 268, 342
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 431, 783
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 2 cut(s) 180, 246
BstKTI GATC 9 cut(s) 348, 406, 445, 478, 520, 694, 835, 886, 921
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 6 cut(s) 23, 171, 305, 720, 726, 729
BstNI CCWGG 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 46, 434, 798
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 82, 85, 666
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 3 cut(s) 517, 691, 832
BstYI RGATCY 3 cut(s) 517, 691, 832
BsuRI GGCC 3 cut(s) 170, 356, 527
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 431, 783
BtsIMutI CAGTG 3 cut(s) 322, 386, 457
Cac8I GCNNGC 6 cut(s) 78, 172, 176, 200, 506, 712
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 2 cut(s) 180, 246
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 789
CviAII CATG 3 cut(s) 409, 595, 881
CviQI GTAC 1 cut(s) 789
DdeI CTNAG 4 cut(s) 147, 203, 268, 342
DpnI GATC 9 cut(s) 347, 405, 444, 477, 519, 693, 834, 885, 920
DpnII GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
DraI TTTAAA 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 854
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 852
EcoRII CCWGG 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 3 cut(s) 412, 598, 884
FaiI YATR 6 cut(s) 378, 380, 410, 579, 596, 882
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 2 cut(s) 63, 75
FatI CATG 3 cut(s) 408, 594, 880
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 3 cut(s) 403, 442, 475
FokI GGATG 2 cut(s) 418, 790
FriOI GRGCYC 1 cut(s) 854
FspBI CTAG 3 cut(s) 30, 153, 258
GlaI GCGC 2 cut(s) 179, 245
GsuI CTGGAG 1 cut(s) 868
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 3 cut(s) 170, 356, 527
HapII CCGG 5 cut(s) 47, 215, 435, 491, 887
HhaI GCGC 2 cut(s) 180, 246
Hin1II CATG 3 cut(s) 412, 598, 884
Hin6I GCGC 2 cut(s) 178, 244
HinP1I GCGC 2 cut(s) 178, 244
HinfI GANTC 6 cut(s) 101, 337, 367, 382, 822, 859
HpaII CCGG 5 cut(s) 47, 215, 435, 491, 887
HphI GGTGA 3 cut(s) 485, 751, 788
Hpy166II GTNNAC 2 cut(s) 426, 767
Hpy188I TCNGA 7 cut(s) 345, 480, 672, 699, 832, 866, 918
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 2 cut(s) 426, 767
Hpy99I CGWCG 4 cut(s) 278, 502, 859, 907
HpyAV CCTTC 1 cut(s) 736
HpyCH4III ACNGT 3 cut(s) 317, 390, 629
HpyCH4V TGCA 2 cut(s) 165, 174
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 171, 305, 720, 726, 729
HpyF3I CTNAG 4 cut(s) 147, 203, 268, 342
Hsp92II CATG 3 cut(s) 412, 598, 884
HspAI GCGC 2 cut(s) 178, 244
Ksp22I TGATCA 3 cut(s) 403, 442, 475
Kzo9I GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
LmnI GCTCC 8 cut(s) 23, 266, 284, 313, 592, 707, 849, 866
Lsp1109I GCAGC 3 cut(s) 82, 85, 666
MaeI CTAG 3 cut(s) 30, 153, 258
MaeIII GTNAC 1 cut(s) 122
MalI GATC 9 cut(s) 347, 405, 444, 477, 519, 693, 834, 885, 920
MboI GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
MboII GAAGA 8 cut(s) 96, 282, 285, 294, 537, 686, 770, 903
MflI RGATCY 3 cut(s) 517, 691, 832
MhlI GDGCHC 2 cut(s) 457, 854
MluCI AATT 2 cut(s) 532, 874
MmeI TCCRAC 2 cut(s) 132, 614
MnlI CCTC 8 cut(s) 185, 277, 351, 367, 474, 641, 682, 727
MseI TTAA 3 cut(s) 417, 486, 636
MspI CCGG 5 cut(s) 47, 215, 435, 491, 887
MspR9I CCNGG 3 cut(s) 48, 436, 800
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 6 cut(s) 23, 171, 305, 720, 726, 729
NciI CCSGG 2 cut(s) 48, 436
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 378
NdeII GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
NlaIII CATG 3 cut(s) 412, 598, 884
NlaIV GGNNCC 2 cut(s) 309, 834
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 6 cut(s) 101, 337, 367, 382, 822, 859
PshBI ATTAAT 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 309, 834
PspPI GGNCC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 3 cut(s) 517, 691, 832
RsaI GTAC 1 cut(s) 790
RsaNI GTAC 1 cut(s) 789
SacI GAGCTC 1 cut(s) 854
SaqAI TTAA 3 cut(s) 417, 486, 636
Sau3AI GATC 9 cut(s) 345, 403, 442, 475, 517, 691, 832, 883, 918
Sau96I GGNCC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 790
ScrFI CCNGG 3 cut(s) 48, 436, 800
SduI GDGCHC 2 cut(s) 457, 854
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 186
Sse9I AATT 2 cut(s) 532, 874
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 3 cut(s) 30, 153, 258
SstI GAGCTC 1 cut(s) 854
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 46, 434, 798
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 317, 390, 629
TaqI TCGA 5 cut(s) 276, 348, 359, 365, 857
TasI AATT 2 cut(s) 532, 874
TatI WGTACW 1 cut(s) 788
TauI GCSGC 7 cut(s) 198, 497, 530, 723, 726, 729, 732
TfiI GAWTC 6 cut(s) 101, 337, 367, 382, 822, 859
Tru1I TTAA 3 cut(s) 417, 486, 636
Tru9I TTAA 3 cut(s) 417, 486, 636
TscAI CASTG 3 cut(s) 322, 393, 457
TseI GCWGC 3 cut(s) 70, 73, 679
TspDTI ATGAA 3 cut(s) 395, 530, 610
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 3 cut(s) 322, 393, 457
VpaK11BI GGWCC 1 cut(s) 186
VspI ATTAAT 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 3 cut(s) 30, 153, 258
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.