AT1G30260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018744
Physical Location & Seq
Forward (+)
10650914 .. 10651829
916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30260.1

Sequence Viewer

Length: 294 bp
ATGGCGACCTCAAGACTTGCAAGATTCATAACGGAAGTTGCGCCACCGCAATTTGTCACGGTGATGCGGCGAAGAACGGCGAAGGTACTCGACACGATCAAGGAGGAAGAAAGAGAAGTTGGCACTGACTCTATATTTCCTTCTTCTTTCAATTCGAAGAAGATCTCTTCACCGTTTACTTCTCCTTATTCATCCTCTGTTTCTTCAGCTTCAGCTTCAGCTTCATGCACTTCCGGTCTAAATAAATTCCCGGTTACAGAGAACCGGGGCTCCTTTCCGGTTTTCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

9.89

Isoelectric Point (pI)

73.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30260
fragaria_vesca FvH4_3g05130
malus_domestica MD10G1258900.v1.1
prunus_persica Prupe.4G084800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014631
rosa_laevigata RLG00000032133
rosa_multiflora Rmu_sc0000120.1_g000018
rosa_samantha Rh5AG115500
rosa_wichuraiana Rw5G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 67
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 3 cut(s) 189, 195, 201
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 2 cut(s) 151, 286
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 209, 215, 221
AluI AGCT 3 cut(s) 209, 215, 221
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 251, 266
AsuHPI GGTGA 2 cut(s) 73, 162
AsuII TTCGAA 1 cut(s) 155
BanII GRGCYC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 2 cut(s) 251, 266
BglII AGATCT 1 cut(s) 162
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 251, 266
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 251, 266
BmsI GCATC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 251, 266
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 233, 277
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 234, 251, 265, 278
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 96, 162
BspACI CCGC 2 cut(s) 47, 67
BspLI GGNNCC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 96, 162
Bst4CI ACNGT 2 cut(s) 61, 174
Bst6I CTCTTC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 155
BstF5I GGATG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 99, 165
BstMBI GATC 2 cut(s) 96, 162
BstSCI CCNGG 2 cut(s) 249, 264
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 225
CviJI RGCY 4 cut(s) 209, 215, 221, 270
CviKI_1 RGCY 4 cut(s) 209, 215, 221, 270
CviQI GTAC 1 cut(s) 86
DpnI GATC 2 cut(s) 98, 164
DpnII GATC 2 cut(s) 96, 162
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 272
Eco57I CTGAAG 3 cut(s) 189, 195, 201
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 228
FaiI YATR 3 cut(s) 29, 134, 226
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 68
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 68
HapII CCGG 4 cut(s) 234, 251, 265, 278
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 24, 128
HpaII CCGG 4 cut(s) 234, 251, 265, 278
HphI GGTGA 2 cut(s) 73, 162
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 12, 286
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 76, 150
HpyCH4III ACNGT 2 cut(s) 61, 174
HpyCH4V TGCA 2 cut(s) 20, 228
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 96, 162
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 3 cut(s) 247, 264, 278
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 55, 253
MalI GATC 2 cut(s) 98, 164
MboI GATC 2 cut(s) 96, 162
MboII GAAGA 7 cut(s) 84, 119, 135, 159, 169, 172, 195
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 3 cut(s) 50, 151, 245
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 3 cut(s) 19, 97, 205
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 4 cut(s) 234, 251, 265, 278
MspR9I CCNGG 2 cut(s) 251, 266
NciI CCSGG 2 cut(s) 251, 266
NdeII GATC 2 cut(s) 96, 162
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 155
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 62
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 96, 162
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 251, 266
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 11, 87, 211, 217, 223
SfaNI GCATC 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 50, 151, 245
SsiI CCGC 2 cut(s) 47, 67
StyD4I CCNGG 2 cut(s) 249, 264
TaaI ACNGT 2 cut(s) 61, 174
TaqI TCGA 2 cut(s) 90, 155
TasI AATT 3 cut(s) 50, 151, 245
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 24
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 16, 180, 213
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 130
XapI RAATTY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.