Rh5AG115500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
10728235 .. 10729219
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG115500.1

Sequence Viewer

Length: 441 bp
ATGCATTCCCTTATAAATTTCGTAGGGTGTGTTCATTCTCATCATCAGCAAGCAAACCTCTCACTTGCGTTTCATCTCTTTGCTCTACTGTTCATTCTAAAGCTCTCTCCTTTTCCTTCTCAATCTTCAAATCAATCTCGCTTGCGAGCGAAGAAAATGGCAAATGCACGCCTAGCAAGGTTCATTACAGAAGCTGCACCACCACAGATTGTTAGTGTCATGAGGCGCAGAACTTCAAAGGTGTTGGATACAATCACTGAGGAGGACAGAGAATATGCTAGCCCTAATGATTCTCTCAATTCCTCACCGAAGGGTTCATCCGCGTTGCCCTCCTCCTCGCCATCAGCACCAAGTTTTGGTTCTGCTGCTGCTGCTGGTACTGATGCCAAGTACTTTCTGAAAGGAGTTCACAGGTCTTTGTCGATGTTCCGTTGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.94

Weight (kDa)

10.28

Isoelectric Point (pI)

75.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30260
fragaria_vesca FvH4_3g05130
malus_domestica MD10G1258900.v1.1
prunus_persica Prupe.4G084800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014631
rosa_laevigata RLG00000032133
rosa_multiflora Rmu_sc0000120.1_g000018
rosa_samantha Rh5AG115500
rosa_wichuraiana Rw5G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 356
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 2 cut(s) 379, 392
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 129, 237
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 2 cut(s) 103, 194
AluI AGCT 2 cut(s) 103, 194
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 4 cut(s) 194, 365, 368, 371
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 297
AsuNHI GCTAGC 1 cut(s) 278
BbvI GCAGC 4 cut(s) 181, 352, 355, 358
BccI CCATC 1 cut(s) 349
BciVI GTATCC 1 cut(s) 241
BfaI CTAG 2 cut(s) 173, 279
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 4 cut(s) 195, 366, 369, 372
BlsI GCNGC 4 cut(s) 196, 367, 370, 373
BmcAI AGTACT 1 cut(s) 392
BmsI GCATC 1 cut(s) 373
BmtI GCTAGC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 3 cut(s) 275, 322, 325
BseXI GCAGC 4 cut(s) 181, 352, 355, 358
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 356
BsmI GAATGC 1 cut(s) 4
BspACI CCGC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 90
BstC8I GCNNGC 5 cut(s) 51, 143, 147, 169, 280
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 317
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 173, 371
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 181, 352, 355, 358
BsuI GTATCC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 2 cut(s) 255, 436
Cac8I GCNNGC 5 cut(s) 51, 143, 147, 169, 280
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 378, 391
CviAII CATG 1 cut(s) 220
CviJI RGCY 3 cut(s) 103, 194, 282
CviKI_1 RGCY 3 cut(s) 103, 194, 282
CviQI GTAC 2 cut(s) 378, 391
DdeI CTNAG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 14, 221, 276
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 195, 366, 369, 372
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 4 cut(s) 195, 366, 369, 372
FspBI CTAG 2 cut(s) 173, 279
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 195, 366, 369, 372
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 126, 304
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 4, 167, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 371
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 226
LpnPI CCDG 2 cut(s) 360, 397
Lsp1109I GCAGC 4 cut(s) 181, 352, 355, 358
LweI GCATC 1 cut(s) 373
MaeI CTAG 2 cut(s) 173, 279
MaeIII GTNAC 1 cut(s) 434
MboII GAAGA 2 cut(s) 117, 163
MluCI AATT 2 cut(s) 16, 298
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 8 cut(s) 68, 216, 253, 256, 313, 340, 343, 346
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 173, 371
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 219
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 4 cut(s) 196, 367, 370, 373
PsiI TTATAA 1 cut(s) 14
PsrI GAACNNNNNNTAC 2 cut(s) 15, 47
PstNI CAGNNNCTG 1 cut(s) 194
RsaI GTAC 2 cut(s) 379, 392
RsaNI GTAC 2 cut(s) 378, 391
SatI GCNGC 4 cut(s) 195, 366, 369, 372
ScaI AGTACT 1 cut(s) 392
SetI ASST 6 cut(s) 60, 105, 182, 196, 243, 416
SfaNI GCATC 1 cut(s) 373
Sse9I AATT 2 cut(s) 16, 298
SsiI CCGC 1 cut(s) 321
SspMI CTAG 2 cut(s) 173, 279
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 422
TasI AATT 2 cut(s) 16, 298
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 194, 365, 368, 371
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 5 cut(s) 23, 62, 82, 172, 306
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 356
XapI RAATTY 1 cut(s) 16
XspI CTAG 2 cut(s) 173, 279
ZrmI AGTACT 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.