FvH4_3g05130

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2977372 .. 2978057
686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05130.t1

Sequence Viewer

Length: 282 bp
ATGGCAAATGCACGCCTAGCAAGGTTCATTACAGAAGTTGCACCACCACAGATTGTTAGTGTCATGAGGCACAGAACTGCAAAGGTGTTGGATACAATCACAGAGGAGGAGAGAGAGTATACTAGCCCTAATGATTCTCTCATTTCCTCGCCCAAGGGTTCATCCTCGTCGGCCTCTTCCTCACCATCAGCACTAAGTTTCGCTTCTGCTGCTGCTCGTACTGATGCCAAGTACTTTCTGAAGGGAGTTCACAGGTCTTTGGCAATGTTCCGTCGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.15

Weight (kDa)

10.25

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30260
fragaria_vesca FvH4_3g05130
malus_domestica MD10G1258900.v1.1
prunus_persica Prupe.4G084800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014631
rosa_laevigata RLG00000032133
rosa_multiflora Rmu_sc0000120.1_g000018
rosa_samantha Rh5AG115500
rosa_wichuraiana Rw5G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 2 cut(s) 220, 233
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 209, 212
AsuHPI GGTGA 1 cut(s) 174
BbvI GCAGC 2 cut(s) 196, 199
BccI CCATC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 2 cut(s) 17, 123
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
BmcAI AGTACT 1 cut(s) 233
BmsI GCATC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse3DI GCAATG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 119, 122
BseXI GCAGC 2 cut(s) 196, 199
BshFI GGCC 1 cut(s) 173
BsnI GGCC 1 cut(s) 173
BspANI GGCC 1 cut(s) 173
BspHI TCATGA 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 153
BssNAI GTATAC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 17, 209
BstV1I GCAGC 2 cut(s) 196, 199
BstZ17I GTATAC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 63
Csp6I GTAC 2 cut(s) 219, 232
CviAII CATG 1 cut(s) 64
CviJI RGCY 2 cut(s) 126, 173
CviKI_1 RGCY 2 cut(s) 126, 173
CviQI GTAC 2 cut(s) 219, 232
DdeI CTNAG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 120
FalI AAGNNNNNCTT 2 cut(s) 187, 219
FatI CATG 1 cut(s) 63
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 210, 213
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 2 cut(s) 17, 123
GluI GCNGC 2 cut(s) 210, 213
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 120, 250
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 120, 250
Hpy99I CGWCG 2 cut(s) 172, 276
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 11, 41, 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 209
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 67
LpnPI CCDG 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 196, 199
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 17, 123
MboII GAAGA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 60, 97, 100, 157, 175, 184, 190
MwoI GCNNNNNNNGC 2 cut(s) 17, 209
NlaIII CATG 1 cut(s) 67
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 211, 214
RsaI GTAC 2 cut(s) 220, 233
RsaNI GTAC 2 cut(s) 219, 232
SatI GCNGC 2 cut(s) 210, 213
ScaI AGTACT 1 cut(s) 233
SetI ASST 3 cut(s) 26, 87, 257
SfaNI GCATC 1 cut(s) 214
SspMI CTAG 2 cut(s) 17, 123
StyI CCWWGG 1 cut(s) 153
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 134
TseI GCWGC 2 cut(s) 209, 212
TspDTI ATGAA 2 cut(s) 16, 150
TspGWI ACGGA 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 2 cut(s) 17, 123
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.