Rw5G009970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0018744
Physical Location & Seq
Forward (+)
10887978 .. 10888875
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009970.1

Sequence Viewer

Length: 285 bp
ATGGCAAATGCACGCCTAGCAAGGTTCATTACAGAAGCTGCACCACCACAGATTGTTAGTGTCATGAGGCGCAGAACTTCAAAGGTGTTGGATACAATCACTGAGGAGGACAGAGAATATGCTAGCCCTAATGATTCTCTCAATTCCTCACCGAAGGGTTCATCCGCGTTGCCCTCCTCCTCGCCATCAGCACCAAGTTTTGGTTCTGCTGCTGCTGCTGGTACTGATGCCAAGTACTTTCTGAAAGGAGTGCACAGGTCTTTGTCGATGTTCCGTTGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.06

Weight (kDa)

9.74

Isoelectric Point (pI)

75.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30260
fragaria_vesca FvH4_3g05130
malus_domestica MD10G1258900.v1.1
prunus_persica Prupe.4G084800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014631
rosa_laevigata RLG00000032133
rosa_multiflora Rmu_sc0000120.1_g000018
rosa_samantha Rh5AG115500
rosa_wichuraiana Rw5G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AccII CGCG 1 cut(s) 167
AciI CCGC 1 cut(s) 165
AfaI GTAC 2 cut(s) 223, 236
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 38
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 4 cut(s) 38, 209, 212, 215
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 25, 196, 199, 202
BccI CCATC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 2 cut(s) 17, 123
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 4 cut(s) 39, 210, 213, 216
BlsI GCNGC 4 cut(s) 40, 211, 214, 217
BmcAI AGTACT 1 cut(s) 236
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 3 cut(s) 119, 166, 169
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 4 cut(s) 25, 196, 199, 202
BsgI GTGCAG 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 255
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 13, 124
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 17, 215
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 4 cut(s) 25, 196, 199, 202
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 99, 280
Cac8I GCNNGC 2 cut(s) 13, 124
CaiI CAGNNNCTG 1 cut(s) 38
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 222, 235
CviAII CATG 1 cut(s) 64
CviJI RGCY 2 cut(s) 38, 126
CviKI_1 RGCY 2 cut(s) 38, 126
CviQI GTAC 2 cut(s) 222, 235
DdeI CTNAG 1 cut(s) 102
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 120
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 39, 210, 213, 216
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 39, 210, 213, 216
FspBI CTAG 2 cut(s) 17, 123
GlaI GCGC 1 cut(s) 71
GluI GCNGC 4 cut(s) 39, 210, 213, 216
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 11, 41, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 215
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 70
LpnPI CCDG 2 cut(s) 204, 241
Lsp1109I GCAGC 4 cut(s) 25, 196, 199, 202
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 17, 123
MaeIII GTNAC 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 60, 97, 100, 157, 184, 187, 190
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 17, 215
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 278
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 4 cut(s) 40, 211, 214, 217
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 223, 236
RsaNI GTAC 2 cut(s) 222, 235
SatI GCNGC 4 cut(s) 39, 210, 213, 216
ScaI AGTACT 1 cut(s) 236
SduI GDGCHC 1 cut(s) 255
SetI ASST 4 cut(s) 26, 40, 87, 260
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 17, 123
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 4 cut(s) 38, 209, 212, 215
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 16, 150
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 200
VneI GTGCAC 1 cut(s) 251
XspI CTAG 2 cut(s) 17, 123
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.