MD10G1258900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
35306778 .. 35307080
303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1258900.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGCGAATTCACGGCTAGCAAGGTTCGTCACAGAAGTTGCGCCACCACAGTTTGTGAGTGTGATGAGGCACAGAACTTCAAAGGTGTTGGATACAATCTATGAGGAGGAGAGAGAAAATGCTCATGCCCCAAACGATTCTCTCACGTCATCATCATCCAACGGTTTTGCTCATTCCTCTTCATCATCGTCATTGTTGTCGCCGTCGTCGCTACCAAGTTTCGCTTCTGCTTCTTCCGCCAGAGCTGAGTCGAAGTACTTTCTGAGAAAGGTTCGTAGGTCTTTGTCGGTGTTTGGACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.94

Weight (kDa)

10.13

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30260
fragaria_vesca FvH4_3g05130
malus_domestica MD10G1258900.v1.1
prunus_persica Prupe.4G084800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014631
rosa_laevigata RLG00000032133
rosa_multiflora Rmu_sc0000120.1_g000018
rosa_samantha Rh5AG115500
rosa_wichuraiana Rw5G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 81
AjiI CACGTC 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 43
AsuNHI GCTAGC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 29, 187
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 17
BfuI GTATCC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 20
BseGI GGATG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 237, 254
BseRI GAGGAG 2 cut(s) 119, 122
BspACI CCGC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 238, 255
BspOI GCTAGC 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 51, 164
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 246, 263
BstF5I GGATG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 208, 236
BsuI GTATCC 1 cut(s) 85
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 125
CviJI RGCY 2 cut(s) 16, 245
CviKI_1 RGCY 2 cut(s) 16, 245
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 246, 263
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 7
FaeI CATG 1 cut(s) 128
FaiI YATR 2 cut(s) 102, 126
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 1 cut(s) 124
FokI GGATG 1 cut(s) 142
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 137, 248
Hpy188I TCNGA 1 cut(s) 264
Hpy99I CGWCG 2 cut(s) 208, 211
HpyCH4III ACNGT 2 cut(s) 51, 164
HpyCH4IV ACGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 236
HpyF3I CTNAG 2 cut(s) 246, 263
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 1 cut(s) 253
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 2 cut(s) 171, 225
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 69, 183
MnlI CCTC 4 cut(s) 60, 97, 100, 187
MwoI GCNNNNNNNGC 2 cut(s) 208, 236
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 1 cut(s) 257
SetI ASST 6 cut(s) 26, 87, 149, 247, 273, 281
SgeI CNNG 7 cut(s) 24, 29, 33, 137, 157, 228, 252
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 51, 164
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 137
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 171
XapI RAATTY 1 cut(s) 7
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.