AT1G32080

LrgB-like family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11537242 .. 11539896
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32080.1

Sequence Viewer

Length: 1539 bp
ATGGCTACTCTTTTAGCCACTCCTATCTTCTCTCCTTTAGCTTCTTCTCCAGCAAGGAACCGTCTTTCTTGCTCTAAGATCCGTTTCGGTTCCAAAAATGGGAAAATTCTCAATTCTGATGGTGCCCAGAAGTTGAATCTCTCAAAATTCCGTAAACCCGATGGCCAAAGATTTCTACAAATGGGTTCTTCTAAAGAGATGAACTTTGAGAGAAAACTCTCAGTCCAAGCTATGGATGGTGCAGGAACAGGAAACACATCAACGATCTCTCGTAACGTAATTGCGATAAGTCACTTGTTGGTATCACTTGGGATCATTCTTGCTGCAGACTATTTCTTGAAGCAGGCGTTTGTAGCAGCGTCTATTAAGTTCCCAAGTGCTTTGTTTGGGATGTTCTGTATTTTCTCTGTTCTTATGATATTTGATTCGGTTGTTCCTGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATCCAAAGATGGCTTCCTTTGTTCTATGTTCCTTCTCTTGTTGTTCTTCCTCTTTCTGTTAGAGATATTCCGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCACTTTGTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAGCCGAGCCTATGGCAAAACCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAATCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAAGAACTTCTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCTATCTGCAGTACTTGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAATGGGTTTTCTTGGCTCTGTCATTCTCTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACGCAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCGCTCTACTCCACTGCTCTTGTTGGACGTTTAGTCGGTTTAGAACCTTCTTTAACGGTTTCAATCCTACCTCGCTGCATCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTACAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTGACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCTTCCCTTTTGTGCAATAGCTTATGCTCTTACCGGAATCTTCGGATCGTTACTGTGTTCTGTTCCTGCCGTCCGACAGAGTTTGCTAGCGGTCGTCGGCTGA

Protein Analysis

512

Amino Acids

54.02

Weight (kDa)

9.63

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LrgB PF04172 276 - 499 4.2e-39 LrgB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32080
fragaria_vesca FvH4_5g23540 FvH4_5g23540
malus_domestica MD06G1023600.v1.1
prunus_persica Prupe.5G024500_v2.0.a1
pyrus_communis pycom06g01920
rosa_chinensis RchiOBHm_Chr7g0212851
rosa_laevigata RLG00000002865
rosa_multiflora Rmu_sc0000394.1_g000049
rosa_roxburghii Rroxscaffold_3G00246510
rosa_rugosa Rorug07G0137000
rosa_samantha Rh7AG268600 Rh7BG264200 Rh7CG287600 Rh7DG276700
rosa_wichuraiana Rw7G023210 Rw7G023330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1267
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 1 cut(s) 902
AciI CCGC 1 cut(s) 1526
AclWI GGATC 7 cut(s) 73, 320, 953, 955, 992, 1349, 1489
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 3 cut(s) 105, 146, 460
AcuI CTGAAG 2 cut(s) 549, 927
AcyI GRCGYC 1 cut(s) 608
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 629, 915, 1323
AfiI CCNNNNNNNGG 5 cut(s) 99, 232, 600, 968, 1007
AgsI TTSAA 9 cut(s) 136, 340, 708, 825, 1069, 1128, 1200, 1256, 1386
AhdI GACNNNNNGTC 1 cut(s) 1169
AjnI CCWGG 1 cut(s) 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AleI CACNNNNGTG 1 cut(s) 1115
Alw21I GWGCWC 2 cut(s) 763, 1393
Alw26I GTCTC 1 cut(s) 1275
AlwI GGATC 7 cut(s) 73, 320, 953, 955, 992, 1349, 1489
AlwNI CAGNNNCTG 3 cut(s) 950, 1001, 1283
Ama87I CYCGRG 1 cut(s) 1365
AoxI GGCC 2 cut(s) 163, 1230
ApoI RAATTY 3 cut(s) 105, 146, 460
Asp700I GAANNNNTTC 2 cut(s) 464, 878
AspLEI GCGC 2 cut(s) 902, 904
AspS9I GGNCC 2 cut(s) 1231, 1260
AsuHPI GGTGA 3 cut(s) 667, 690, 1022
AsuNHI GCTAGC 1 cut(s) 1522
AvaI CYCGRG 1 cut(s) 1365
AvaII GGWCC 1 cut(s) 1260
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 122
BauI CACGAG 1 cut(s) 1082
Bbv12I GWGCWC 2 cut(s) 763, 1393
BccI CCATC 8 cut(s) 113, 155, 230, 489, 594, 703, 868, 891
BceAI ACGGC 1 cut(s) 1490
BcgI CGANNNNNNTGC 2 cut(s) 1398, 1432
BciT130I CCWGG 1 cut(s) 1002
BcoDI GTCTC 1 cut(s) 1275
BfaI CTAG 3 cut(s) 833, 926, 1523
BfmI CTRYAG 3 cut(s) 324, 909, 1284
BglII AGATCT 1 cut(s) 1104
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 1 cut(s) 1260
BmeRI GACNNNNNGTC 1 cut(s) 1169
BmeT110I CYCGRG 1 cut(s) 1365
BmgT120I GGNCC 2 cut(s) 1231, 1260
BmiI GGNNCC 5 cut(s) 59, 91, 124, 1261, 1428
BmrFI CCNGG 1 cut(s) 1002
BmsI GCATC 2 cut(s) 1001, 1224
BmtI GCTAGC 1 cut(s) 1526
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 2 cut(s) 1235, 1422
BpuEI CTTGAG 1 cut(s) 734
BsaAI YACGTR 1 cut(s) 1352
BsaHI GRCGYC 1 cut(s) 608
BsaWI WCCGGW 1 cut(s) 1469
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 232, 600, 968, 1007
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 1303
BseBI CCWGG 1 cut(s) 1002
BseGI GGATG 4 cut(s) 241, 396, 605, 883
BseLI CCNNNNNNNGG 5 cut(s) 99, 232, 600, 968, 1007
BseMII CTCAG 2 cut(s) 234, 1092
BseNI ACTGG 1 cut(s) 1303
BsePI GCGCGC 1 cut(s) 900
BseSI GKGCMC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 902
Bsh1285I CGRYCG 1 cut(s) 1530
BshFI GGCC 2 cut(s) 165, 1232
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 1530
BsiHKAI GWGCWC 2 cut(s) 763, 1393
BsiHKCI CYCGRG 1 cut(s) 1365
BsiSI CCGG 3 cut(s) 557, 594, 1470
BslFI GGGAC 2 cut(s) 799, 1273
BslI CCNNNNNNNGG 5 cut(s) 99, 232, 600, 968, 1007
BsmAI GTCTC 1 cut(s) 1275
BsmBI CGTCTC 1 cut(s) 1275
BsmFI GGGAC 2 cut(s) 799, 1273
BsnI GGCC 2 cut(s) 165, 1232
BsoBI CYCGRG 1 cut(s) 1365
Bsp1286I GDGCHC 3 cut(s) 127, 763, 1393
Bsp1407I TGTACA 1 cut(s) 1321
Bsp143I GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
BspACI CCGC 1 cut(s) 1526
BspANI GGCC 2 cut(s) 165, 1232
BspCNI CTCAG 2 cut(s) 233, 1093
BspFNI CGCG 1 cut(s) 902
BspLI GGNNCC 5 cut(s) 59, 91, 124, 1261, 1428
BspMAI CTGCAG 2 cut(s) 328, 913
BspOI GCTAGC 1 cut(s) 1526
BspPI GGATC 7 cut(s) 73, 320, 953, 955, 992, 1349, 1489
BspQI GCTCTTC 1 cut(s) 1443
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 593
BsrGI TGTACA 1 cut(s) 1321
BsrI ACTGG 1 cut(s) 1303
BssAI RCCGGY 1 cut(s) 593
BssHII GCGCGC 1 cut(s) 900
BssMI GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
BssNI GRCGYC 1 cut(s) 608
BssSI CACGAG 1 cut(s) 1082
Bst2BI CACGAG 1 cut(s) 1082
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 6 cut(s) 62, 829, 1132, 1195, 1222, 1491
Bst6I CTCTTC 2 cut(s) 1082, 1443
BstACI GRCGYC 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 1321
BstBAI YACGTR 1 cut(s) 1352
BstC8I GCNNGC 5 cut(s) 345, 474, 902, 1095, 1524
BstDEI CTNAG 5 cut(s) 75, 220, 1101, 1235, 1422
BstENI CCTNNNNNAGG 1 cut(s) 966
BstF5I GGATG 4 cut(s) 241, 396, 605, 883
BstFNI CGCG 1 cut(s) 902
BstHHI GCGC 2 cut(s) 902, 904
BstKTI GATC 9 cut(s) 81, 267, 315, 950, 961, 1000, 1107, 1357, 1484
BstMAI GTCTC 1 cut(s) 1275
BstMBI GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
BstMCI CGRYCG 1 cut(s) 1530
BstMWI GCNNNNNNNGC 6 cut(s) 353, 908, 917, 926, 1388, 1418
BstNI CCWGG 1 cut(s) 1002
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 3 cut(s) 324, 909, 1284
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 902
BstX2I RGATCY 4 cut(s) 78, 947, 997, 1104
BstYI RGATCY 4 cut(s) 78, 947, 997, 1104
BsuRI GGCC 2 cut(s) 165, 1232
BtsCI GGATG 4 cut(s) 241, 396, 605, 883
BtsI GCAGTG 2 cut(s) 648, 1149
BtsIMutI CAGTG 2 cut(s) 648, 1149
Cac8I GCNNGC 5 cut(s) 345, 474, 902, 1095, 1524
CaiI CAGNNNCTG 3 cut(s) 950, 1001, 1283
CfoI GCGC 2 cut(s) 902, 904
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 1231, 1260
CseI GACGC 2 cut(s) 348, 597
Csp6I GTAC 3 cut(s) 628, 914, 1322
CspCI CAANNNNNGTGG 2 cut(s) 1138, 1173
CviAII CATG 2 cut(s) 1063, 1394
CviQI GTAC 3 cut(s) 628, 914, 1322
DdeI CTNAG 5 cut(s) 75, 220, 1101, 1235, 1422
DpnI GATC 9 cut(s) 80, 266, 314, 949, 960, 999, 1106, 1356, 1483
DpnII GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
DraIII CACNNNGTG 1 cut(s) 617
DrdI GACNNNNNNGTC 1 cut(s) 1267
DriI GACNNNNNGTC 1 cut(s) 1169
DseDI GACNNNNNNGTC 1 cut(s) 1267
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 1082, 1443
Eam1105I GACNNNNNGTC 1 cut(s) 1169
EarI CTCTTC 2 cut(s) 1082, 1443
Eco47I GGWCC 1 cut(s) 1260
Eco57I CTGAAG 2 cut(s) 549, 927
Eco88I CYCGRG 1 cut(s) 1365
EcoNI CCTNNNNNAGG 1 cut(s) 966
EcoRII CCWGG 1 cut(s) 1000
Esp3I CGTCTC 1 cut(s) 1275
FaeI CATG 2 cut(s) 1066, 1397
FaiI YATR 9 cut(s) 233, 416, 513, 686, 721, 939, 1064, 1395, 1461
FalI AAGNNNNNCTT 2 cut(s) 1317, 1349
FaqI GGGAC 2 cut(s) 799, 1273
FatI CATG 2 cut(s) 1062, 1393
FokI GGATG 4 cut(s) 248, 403, 612, 870
FspBI CTAG 3 cut(s) 833, 926, 1523
GlaI GCGC 2 cut(s) 901, 903
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 165, 1232
HapII CCGG 3 cut(s) 557, 594, 1470
HgaI GACGC 2 cut(s) 348, 597
HhaI GCGC 2 cut(s) 902, 904
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 2 cut(s) 1066, 1397
Hin6I GCGC 2 cut(s) 900, 902
HinP1I GCGC 2 cut(s) 900, 902
HinfI GANTC 4 cut(s) 136, 425, 735, 1473
HpaII CCGG 3 cut(s) 557, 594, 1470
HphI GGTGA 3 cut(s) 667, 690, 1022
Hpy166II GTNNAC 3 cut(s) 155, 630, 1349
Hpy188I TCNGA 6 cut(s) 118, 888, 997, 1305, 1481, 1511
Hpy188III TCNNGA 5 cut(s) 337, 945, 951, 1084, 1334
Hpy8I GTNNAC 3 cut(s) 155, 630, 1349
Hpy99I CGWCG 1 cut(s) 1535
HpyAV CCTTC 4 cut(s) 528, 824, 1194, 1250
HpyCH4III ACNGT 6 cut(s) 62, 829, 1132, 1195, 1222, 1491
HpyCH4IV ACGT 3 cut(s) 276, 1165, 1351
HpyF10VI GCNNNNNNNGC 6 cut(s) 353, 908, 917, 926, 1388, 1418
HpyF3I CTNAG 5 cut(s) 75, 220, 1101, 1235, 1422
HpySE526I ACGT 3 cut(s) 276, 1165, 1351
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 2 cut(s) 1066, 1397
HspAI GCGC 2 cut(s) 900, 902
Kzo9I GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
LguI GCTCTTC 1 cut(s) 1443
LmnI GCTCC 2 cut(s) 1310, 1426
LweI GCATC 2 cut(s) 1001, 1224
MaeI CTAG 3 cut(s) 833, 926, 1523
MaeII ACGT 3 cut(s) 276, 1165, 1351
MaeIII GTNAC 7 cut(s) 272, 290, 609, 836, 1010, 1294, 1485
MalI GATC 9 cut(s) 80, 266, 314, 949, 960, 999, 1106, 1356, 1483
MboI GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
MfeI CAATTG 1 cut(s) 1359
MflI RGATCY 4 cut(s) 78, 947, 997, 1104
MhlI GDGCHC 3 cut(s) 127, 763, 1393
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 9 cut(s) 105, 112, 146, 279, 460, 775, 1264, 1359, 1371
MluNI TGGCCA 1 cut(s) 165
MmeI TCCRAC 3 cut(s) 707, 1141, 1534
MnlI CCTC 4 cut(s) 546, 1083, 1218, 1426
Mox20I TGGCCA 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 464, 878
MscI TGGCCA 1 cut(s) 165
MseI TTAA 4 cut(s) 366, 870, 1019, 1190
MslI CAYNNNNRTG 2 cut(s) 1019, 1115
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 1100, 1283
MspI CCGG 3 cut(s) 557, 594, 1470
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 1359
MvaI CCWGG 1 cut(s) 1002
MvnI CGCG 1 cut(s) 902
MwoI GCNNNNNNNGC 6 cut(s) 353, 908, 917, 926, 1388, 1418
NdeII GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
NheI GCTAGC 1 cut(s) 1522
NlaIII CATG 2 cut(s) 1066, 1397
NlaIV GGNNCC 5 cut(s) 59, 91, 124, 1261, 1428
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 4 cut(s) 290, 609, 1010, 1294
OliI CACNNNNGTG 1 cut(s) 1115
PauI GCGCGC 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 1443
PdmI GAANNNNTTC 2 cut(s) 464, 878
PfeI GAWTC 4 cut(s) 136, 425, 735, 1473
PflMI CCANNNNNTGG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 1352
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 5 cut(s) 59, 91, 124, 1261, 1428
PspPI GGNCC 2 cut(s) 1231, 1260
PsrI GAACNNNNNNTAC 2 cut(s) 1314, 1346
PstI CTGCAG 2 cut(s) 328, 913
PstNI CAGNNNCTG 3 cut(s) 950, 1001, 1283
PsuI RGATCY 4 cut(s) 78, 947, 997, 1104
PteI GCGCGC 1 cut(s) 900
PvuII CAGCTG 2 cut(s) 1100, 1283
RsaI GTAC 3 cut(s) 629, 915, 1323
RsaNI GTAC 3 cut(s) 628, 914, 1322
RseI CAYNNNNRTG 2 cut(s) 1019, 1115
SapI GCTCTTC 1 cut(s) 1443
SaqAI TTAA 4 cut(s) 366, 870, 1019, 1190
Sau3AI GATC 9 cut(s) 78, 264, 312, 947, 958, 997, 1104, 1354, 1481
Sau96I GGNCC 2 cut(s) 1231, 1260
ScaI AGTACT 1 cut(s) 915
ScrFI CCNGG 1 cut(s) 1002
SduI GDGCHC 3 cut(s) 127, 763, 1393
SfaNI GCATC 2 cut(s) 1001, 1224
SfcI CTRYAG 3 cut(s) 324, 909, 1284
SinI GGWCC 1 cut(s) 1260
SmiMI CAYNNNNRTG 2 cut(s) 1019, 1115
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
Sse9I AATT 9 cut(s) 105, 112, 146, 279, 460, 775, 1264, 1359, 1371
SsiI CCGC 1 cut(s) 1526
SspMI CTAG 3 cut(s) 833, 926, 1523
StyD4I CCNGG 1 cut(s) 1000
TaaI ACNGT 6 cut(s) 62, 829, 1132, 1195, 1222, 1491
TaiI ACGT 3 cut(s) 279, 1168, 1354
TaqI TCGA 1 cut(s) 468
TasI AATT 9 cut(s) 105, 112, 146, 279, 460, 775, 1264, 1359, 1371
TatI WGTACW 2 cut(s) 913, 1321
TfiI GAWTC 4 cut(s) 136, 425, 735, 1473
Tru1I TTAA 4 cut(s) 366, 870, 1019, 1190
Tru9I TTAA 4 cut(s) 366, 870, 1019, 1190
TscAI CASTG 2 cut(s) 648, 1156
TseFI GTSAC 4 cut(s) 290, 609, 1010, 1294
Tsp45I GTSAC 4 cut(s) 290, 609, 1010, 1294
TspDTI ATGAA 3 cut(s) 215, 473, 768
TspGWI ACGGA 3 cut(s) 71, 140, 686
TspRI CASTG 2 cut(s) 648, 1156
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 1260
XagI CCTNNNNNAGG 1 cut(s) 966
XapI RAATTY 3 cut(s) 105, 146, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmnI GAANNNNTTC 2 cut(s) 464, 878
XspI CTAG 3 cut(s) 833, 926, 1523
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.