FvH4_5g23540

Plastidal glycolate glycerate translocator 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14875315 .. 14881458
6144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23540.t1

Sequence Viewer

Length: 1587 bp
ATGTCGACCTTCTTCTCGGCCGCACCCAATAACATTCATTCCTGTTTCCGCAGCCACCACAATTCGTTATTCTTTTTCCCTACTTGTGTCACTTCTTCAGTTTCCAAATATCAGGGAAGCCATCAAAGATCCTCGTCTGTTACTTTCAAGAGCGTCAGATCAAAACATAACAGGACCAGTTCCCAGAACACCACTGTTTTTGGAGGACTCAACTCCTCCAGGTTCCTGCACACGGGTTTTGAAAAAGCATGCTCCAAGAGACAAAGCCTGATCATGTCAAGTGGCTCACACAGTGCCAGTACTGCCACTCTGTCTCAGAATGTGGTTGGGGTTTTGCATCTGGTTGTTTCACTTGGGATCATTCTTGCAATAGACAATTTCTTGAAGAAGGCATTCGTGGCAGCTGCTATTAAGTTCCCTAGTGCACTTTTCGGCATGTTTTGTATATTCTCAATTCTAATTGTTCTTGATGTCACTGTTCCTTCTGTGGCAACAAGCTTGATGAAATTCTTTCAGCCGGCACTGTTGTTCATTCAGAGATGGCTGCCATTGTTTTATGTGCCATCGTTGGTTGTTTTGCCGCTTTCAGTTAAGAGTATTCCCCCGGCTTCTGGCATCAAGATTTGCTTCATTATAGTTGGAGGCTGGCTAGCTTCACTAGCTGTTGCAGGATATACGGCAATAGCTGTCAGAAAACTGGTAAAGACAGAAATGACAGATGCTGAGCCTATGGCAAAACCCTCTCCATTTTCTTCACTTGAAGCATGGTCTTGGAGTGGGATCCTCCTCATCTCATTCGTTGGAGCATTAGTAAACCCAACAGCACTGGGGACAAGTGCTCGGACCTGTCTTCCATTCCTACTTGCATCCACTGTGTTAGGTTACATTGTTGGTTCTGGATTACCATCAGAGGTGAAGAAGGTTTTCCACCCAATTATTTGTTGTGCACTATCTGCAGATCTGGCAGCACTGGCTTATGGATACTTTTCCAAGTCTGGGCTGGATCCTGTTCTTGCATCTTACCTTACAAAGGTTTCATCAAACCCTGGAGCTGGTGATATTCTGATGGGATTCTTAGGGTCTGTTATCCTCTCATTTGCTTTCTCAATGTTCCAACAGAGGAAGCTGGTCAAGAGGCATGCAGCAGAGATTTTCACATCTGTAATCTTGTCCTGCATATTCTCGTTGTATTCAACCGCTCTTATTGGCCGCCTCGTTGGGTTAGAATCAAATTTGACTGTCTCAATTCTGCCACGATGTATAACCGTGGCATTAGCCCTCAGCATTGTGTCTTTGTTCGAAGGTGCCAATTCATCTCTCACAGCTGCTGTTGTTGTAGTAACTGGTTTGGTGGGAGCTAATTTTGTACAGGCAACACTTGATAAACTACAGTTCCGAGATCCTATTGCTCGGGGAATAGCTACTGCATCTAGTGCTCATGGATTGGGAACAGCAGCATTGTCAGCCAAGGAACCCGAGGCTCTCCCATTTTGTGCCATTGCTTATGCTCTGAATGGTATATTTGGTTCTTTGATCTGCTCAATTCCAGCAGTCAGGCAAAGCTTGCTTGCCGTGATTGGATCATGA

Protein Analysis

529

Amino Acids

55.82

Weight (kDa)

9.63

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LrgB PF04172 291 - 514 1e-37 LrgB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32080
fragaria_vesca FvH4_5g23540 FvH4_5g23540
malus_domestica MD06G1023600.v1.1
prunus_persica Prupe.5G024500_v2.0.a1
pyrus_communis pycom06g01920
rosa_chinensis RchiOBHm_Chr7g0212851
rosa_laevigata RLG00000002865
rosa_multiflora Rmu_sc0000394.1_g000049
rosa_roxburghii Rroxscaffold_3G00246510
rosa_rugosa Rorug07G0137000
rosa_samantha Rh7AG268600 Rh7BG264200 Rh7CG287600 Rh7DG276700
rosa_wichuraiana Rw7G023210 Rw7G023330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1304
AccBSI CCGCTC 1 cut(s) 1199
AccI GTMKAC 1 cut(s) 5
AciI CCGC 5 cut(s) 21, 49, 581, 1197, 1210
AclWI GGATC 7 cut(s) 123, 365, 775, 788, 998, 1011, 1394
AcoI YGGCCR 2 cut(s) 18, 1207
AcsI RAATTY 2 cut(s) 506, 1231
AcuI CTGAAG 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 2 cut(s) 301, 1368
AfiI CCNNNNNNNGG 5 cut(s) 232, 611, 996, 1030, 1052
AgsI TTSAA 5 cut(s) 148, 242, 385, 761, 1194
AjnI CCWGG 2 cut(s) 218, 1045
Alw21I GWGCWC 4 cut(s) 427, 841, 949, 1438
Alw26I GTCTC 3 cut(s) 253, 318, 1246
Alw44I GTGCAC 2 cut(s) 423, 945
AlwI GGATC 7 cut(s) 123, 365, 775, 788, 998, 1011, 1394
AlwNI CAGNNNCTG 2 cut(s) 722, 1328
Ama87I CYCGRG 2 cut(s) 1410, 1475
AoxI GGCC 2 cut(s) 18, 1207
ApaLI GTGCAC 2 cut(s) 423, 945
ApeKI GCWGC 8 cut(s) 51, 401, 404, 544, 965, 1142, 1325, 1454
ApoI RAATTY 2 cut(s) 506, 1231
Asp700I GAANNNNTTC 2 cut(s) 392, 923
AspS9I GGNCC 2 cut(s) 174, 843
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 925, 1067
AsuII TTCGAA 1 cut(s) 1299
AsuNHI GCTAGC 1 cut(s) 649
AvaI CYCGRG 2 cut(s) 1410, 1475
AvaII GGWCC 2 cut(s) 174, 843
BaeGI GKGCMC 2 cut(s) 427, 949
BamHI GGATCC 2 cut(s) 780, 1003
BanI GGYRCC 1 cut(s) 1304
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 4 cut(s) 427, 841, 949, 1438
BbvCI CCTCAGC 1 cut(s) 1280
BbvI GCAGC 8 cut(s) 63, 391, 413, 531, 977, 1154, 1312, 1466
BccI CCATC 5 cut(s) 129, 534, 571, 913, 1060
BceAI ACGGC 2 cut(s) 693, 1556
BciT130I CCWGG 2 cut(s) 220, 1047
BciVI GTATCC 1 cut(s) 974
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 3 cut(s) 253, 318, 1246
BfaI CTAG 4 cut(s) 420, 650, 659, 1431
BfmI CTRYAG 2 cut(s) 954, 1388
BfuI GTATCC 1 cut(s) 974
BglII AGATCT 1 cut(s) 958
BlpI GCTNAGC 1 cut(s) 723
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 3 cut(s) 220, 605, 1047
Bme18I GGWCC 2 cut(s) 174, 843
BmeT110I CYCGRG 2 cut(s) 1410, 1475
BmgT120I GGNCC 2 cut(s) 174, 843
BmiI GGNNCC 5 cut(s) 224, 782, 1005, 1306, 1473
BmrFI CCNGG 3 cut(s) 220, 605, 1047
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 6 cut(s) 346, 624, 709, 875, 1025, 1436
BmtI GCTAGC 1 cut(s) 653
BmuI ACTGGG 1 cut(s) 836
BpiI GAAGAC 1 cut(s) 842
BpmI CTGGAG 2 cut(s) 202, 1068
Bpu10I CCTNAGC 1 cut(s) 1280
Bpu1102I GCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 1 cut(s) 1299
BpuMI CCSGG 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 904
BsaJI CCNNGG 5 cut(s) 603, 1045, 1266, 1467, 1476
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 611, 996, 1030, 1052
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 6 cut(s) 177, 297, 702, 831, 975, 1348
Bse3DI GCAATG 1 cut(s) 1497
Bse8I GATNNNNATC 1 cut(s) 904
BseBI CCWGG 2 cut(s) 220, 1047
BseDI CCNNGG 5 cut(s) 603, 1045, 1266, 1467, 1476
BseGI GGATG 1 cut(s) 866
BseJI GATNNNNATC 1 cut(s) 904
BseLI CCNNNNNNNGG 5 cut(s) 232, 611, 996, 1030, 1052
BseMI GCAATG 1 cut(s) 1497
BseMII CTCAG 3 cut(s) 329, 714, 1294
BseNI ACTGG 6 cut(s) 177, 297, 702, 831, 975, 1348
BseRI GAGGAG 2 cut(s) 205, 776
BseSI GKGCMC 2 cut(s) 427, 949
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 8 cut(s) 63, 391, 413, 531, 977, 1154, 1312, 1466
BsgI GTGCAG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 20, 1209
BshNI GGYRCC 1 cut(s) 1304
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 4 cut(s) 427, 841, 949, 1438
BsiHKCI CYCGRG 2 cut(s) 1410, 1475
BsiSI CCGG 2 cut(s) 518, 605
BslFI GGGAC 1 cut(s) 844
BslI CCNNNNNNNGG 5 cut(s) 232, 611, 996, 1030, 1052
BsmAI GTCTC 3 cut(s) 253, 318, 1246
BsmFI GGGAC 1 cut(s) 844
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 2 cut(s) 20, 1209
BsoBI CYCGRG 2 cut(s) 1410, 1475
Bsp119I TTCGAA 1 cut(s) 1299
Bsp1286I GDGCHC 4 cut(s) 427, 841, 949, 1438
Bsp1407I TGTACA 1 cut(s) 1366
Bsp1720I GCTNAGC 1 cut(s) 723
BspACI CCGC 5 cut(s) 21, 49, 581, 1197, 1210
BspANI GGCC 2 cut(s) 20, 1209
BspCNI CTCAG 3 cut(s) 328, 715, 1293
BspHI TCATGA 1 cut(s) 1583
BspLI GGNNCC 5 cut(s) 224, 782, 1005, 1306, 1473
BspMAI CTGCAG 1 cut(s) 958
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 7 cut(s) 123, 365, 775, 788, 998, 1011, 1394
BspT104I TTCGAA 1 cut(s) 1299
BspT107I GGYRCC 1 cut(s) 1304
BsrBI CCGCTC 1 cut(s) 1199
BsrDI GCAATG 1 cut(s) 1497
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 1366
BsrI ACTGG 6 cut(s) 177, 297, 702, 831, 975, 1348
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 5 cut(s) 603, 1045, 1266, 1467, 1476
BssT1I CCWWGG 1 cut(s) 1467
Bst2UI CCWGG 2 cut(s) 220, 1047
Bst4CI ACNGT 8 cut(s) 196, 293, 478, 525, 874, 1240, 1267, 1392
BstAPI GCANNNNNTGC 3 cut(s) 953, 1433, 1564
BstAUI TGTACA 1 cut(s) 1366
BstBI TTCGAA 1 cut(s) 1299
BstC8I GCNNGC 7 cut(s) 250, 519, 647, 651, 1140, 1565, 1569
BstDEI CTNAG 4 cut(s) 315, 723, 1075, 1280
BstDSI CCRYGG 1 cut(s) 1266
BstENI CCTNNNNNAGG 1 cut(s) 1028
BstF5I GGATG 1 cut(s) 866
BstMAI GTCTC 3 cut(s) 253, 318, 1246
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 9 cut(s) 302, 398, 659, 953, 962, 971, 1433, 1463, 1564
BstNI CCWGG 2 cut(s) 220, 1047
BstNSI RCATGY 3 cut(s) 252, 439, 1142
BstSCI CCNGG 3 cut(s) 218, 603, 1045
BstSFI CTRYAG 2 cut(s) 954, 1388
BstSLI GKGCMC 2 cut(s) 427, 949
BstV1I GCAGC 8 cut(s) 63, 391, 413, 531, 977, 1154, 1312, 1466
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 5 cut(s) 128, 780, 958, 1003, 1399
BstYI RGATCY 5 cut(s) 128, 780, 958, 1003, 1399
BstZI CGGCCG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 2 cut(s) 20, 1209
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 1 cut(s) 866
BtsIMutI CAGTG 7 cut(s) 192, 298, 474, 521, 824, 870, 968
Cac8I GCNNGC 7 cut(s) 250, 519, 647, 651, 1140, 1565, 1569
CaiI CAGNNNCTG 2 cut(s) 722, 1328
CciI TCATGA 1 cut(s) 1583
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 174, 843
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 300, 1367
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 7 cut(s) 249, 274, 436, 765, 1139, 1439, 1584
CviQI GTAC 2 cut(s) 300, 1367
DdeI CTNAG 4 cut(s) 315, 723, 1075, 1280
DraIII CACNNNGTG 1 cut(s) 293
EaeI YGGCCR 2 cut(s) 18, 1207
EagI CGGCCG 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 1467
Eco47I GGWCC 2 cut(s) 174, 843
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 2 cut(s) 1410, 1475
EcoNI CCTNNNNNAGG 1 cut(s) 1028
EcoRII CCWGG 2 cut(s) 218, 1045
EcoT14I CCWWGG 1 cut(s) 1467
ErhI CCWWGG 1 cut(s) 1467
FaeI CATG 7 cut(s) 252, 277, 439, 768, 1142, 1442, 1587
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 1 cut(s) 844
FatI CATG 7 cut(s) 248, 273, 435, 764, 1138, 1438, 1583
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 853
FspBI CTAG 4 cut(s) 420, 650, 659, 1431
GsuI CTGGAG 2 cut(s) 202, 1068
HaeIII GGCC 2 cut(s) 20, 1209
HapII CCGG 2 cut(s) 518, 605
HgaI GACGC 1 cut(s) 142
Hin1II CATG 7 cut(s) 252, 277, 439, 768, 1142, 1442, 1587
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 496, 1561
HinfI GANTC 3 cut(s) 207, 1071, 1226
HpaII CCGG 2 cut(s) 518, 605
HphI GGTGA 2 cut(s) 925, 1067
Hpy166II GTNNAC 4 cut(s) 6, 425, 814, 947
Hpy188I TCNGA 9 cut(s) 158, 318, 537, 692, 843, 910, 1065, 1397, 1512
Hpy188III TCNNGA 7 cut(s) 148, 382, 467, 619, 897, 1132, 1584
Hpy8I GTNNAC 4 cut(s) 6, 425, 814, 947
HpyAV CCTTC 5 cut(s) 19, 382, 492, 913, 1295
HpyCH4III ACNGT 8 cut(s) 196, 293, 478, 525, 874, 1240, 1267, 1392
HpyF10VI GCNNNNNNNGC 9 cut(s) 302, 398, 659, 953, 962, 971, 1433, 1463, 1564
HpyF3I CTNAG 4 cut(s) 315, 723, 1075, 1280
Hsp92II CATG 7 cut(s) 252, 277, 439, 768, 1142, 1442, 1587
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 270
LmnI GCTCC 4 cut(s) 257, 803, 1049, 1355
Lsp1109I GCAGC 8 cut(s) 63, 391, 413, 531, 977, 1154, 1312, 1466
LweI GCATC 6 cut(s) 346, 624, 709, 875, 1025, 1436
MaeI CTAG 4 cut(s) 420, 650, 659, 1431
MaeIII GTNAC 5 cut(s) 88, 139, 472, 881, 1339
MbiI CCGCTC 1 cut(s) 1199
MboII GAAGA 6 cut(s) 4, 87, 397, 744, 842, 928
MflI RGATCY 5 cut(s) 128, 780, 958, 1003, 1399
MhlI GDGCHC 4 cut(s) 427, 841, 949, 1438
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 3 cut(s) 619, 781, 1138
MroNI GCCGGC 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 392, 923
MseI TTAA 2 cut(s) 411, 591
MspA1I CMGCKG 2 cut(s) 404, 1325
MspI CCGG 2 cut(s) 518, 605
MspR9I CCNGG 3 cut(s) 220, 605, 1047
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 220, 1047
MwoI GCNNNNNNNGC 9 cut(s) 302, 398, 659, 953, 962, 971, 1433, 1463, 1564
NaeI GCCGGC 1 cut(s) 519
NciI CCSGG 1 cut(s) 605
NgoMIV GCCGGC 1 cut(s) 517
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 7 cut(s) 252, 277, 439, 768, 1142, 1442, 1587
NlaIV GGNNCC 5 cut(s) 224, 782, 1005, 1306, 1473
NmuCI GTSAC 2 cut(s) 88, 472
NspI RCATGY 3 cut(s) 252, 439, 1142
NspV TTCGAA 1 cut(s) 1299
PaeI GCATGC 2 cut(s) 252, 1142
PagI TCATGA 1 cut(s) 1583
PctI GAATGC 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 519
PdmI GAANNNNTTC 2 cut(s) 392, 923
PfeI GAWTC 2 cut(s) 1071, 1226
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 218, 1045
PspGI CCWGG 2 cut(s) 218, 1045
PspN4I GGNNCC 5 cut(s) 224, 782, 1005, 1306, 1473
PspPI GGNCC 2 cut(s) 174, 843
PsrI GAACNNNNNNTAC 2 cut(s) 1510, 1542
PstI CTGCAG 1 cut(s) 958
PstNI CAGNNNCTG 2 cut(s) 722, 1328
PsuI RGATCY 5 cut(s) 128, 780, 958, 1003, 1399
PvuII CAGCTG 2 cut(s) 404, 1325
RsaI GTAC 2 cut(s) 301, 1368
RsaNI GTAC 2 cut(s) 300, 1367
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 411, 591
Sau96I GGNCC 2 cut(s) 174, 843
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 3 cut(s) 220, 605, 1047
SduI GDGCHC 4 cut(s) 427, 841, 949, 1438
SfaNI GCATC 6 cut(s) 346, 624, 709, 875, 1025, 1436
SfcI CTRYAG 2 cut(s) 954, 1388
SfuI TTCGAA 1 cut(s) 1299
SinI GGWCC 2 cut(s) 174, 843
SphI GCATGC 2 cut(s) 252, 1142
SsiI CCGC 5 cut(s) 21, 49, 581, 1197, 1210
SspMI CTAG 4 cut(s) 420, 650, 659, 1431
StyD4I CCNGG 3 cut(s) 218, 603, 1045
StyI CCWWGG 1 cut(s) 1467
TaaI ACNGT 8 cut(s) 196, 293, 478, 525, 874, 1240, 1267, 1392
TaqI TCGA 2 cut(s) 5, 1299
TatI WGTACW 2 cut(s) 299, 1366
TauI GCSGC 3 cut(s) 23, 583, 1212
TfiI GAWTC 2 cut(s) 1071, 1226
Tru1I TTAA 2 cut(s) 411, 591
Tru9I TTAA 2 cut(s) 411, 591
TscAI CASTG 7 cut(s) 199, 298, 481, 528, 831, 877, 975
TseFI GTSAC 2 cut(s) 88, 472
TseI GCWGC 8 cut(s) 51, 401, 404, 544, 965, 1142, 1325, 1454
Tsp45I GTSAC 2 cut(s) 88, 472
TspDTI ATGAA 6 cut(s) 26, 518, 520, 619, 1026, 1302
TspRI CASTG 7 cut(s) 199, 298, 481, 528, 831, 877, 975
VneI GTGCAC 2 cut(s) 423, 945
VpaK11BI GGWCC 2 cut(s) 174, 843
XagI CCTNNNNNAGG 1 cut(s) 1028
XapI RAATTY 2 cut(s) 506, 1231
XceI RCATGY 3 cut(s) 252, 439, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 392, 923
XspI CTAG 4 cut(s) 420, 650, 659, 1431
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.