Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014623

Physical Location & Seq

Genomic Coordinates Reverse (-)

29822677 .. 29827519

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTTTGTATATTCTCAATTCTAATCGGTCTTGATGCCACTGTTCCTGATGTGGCAAAAAGCTTGATGAGTTTCTTTCAGCCGGCGCTGTTGTTCATTCAGAGATGGCTGCCGTTGTTTTATGTGCCATCTTTGGTTGTTTTGCCGCTTTCTGTTAAGAGTATTCCCCCGGCTTCTGGCATCAAGATTTGCTATATTATAGCTGGAGGCTGGCTGGCTTCACTAGCTGTTGCAGGATATACGGCAATAGCAATCAGAAAACTGGTAAAGACAGAAATGACAGATGCTGAGCCTATGGCAAAACCCTCTCCATTTTCTTCCCTTGAAGCATGGTCTTGGAGTGGGATCCTCCTCATCTCATTTGTTGGAGCATTAGTAAACCCAACAGCACTGGGGACAAGTGCTCTGACATGCCTTCCATTCCTACTTGCATCCACTGTGTTAGGTTACATTGTTGGTTCTGGATTGCCATCAGATGTGAAGAAGATTTTCCACCCAATTATTTGTTGTGCCCTATCTGCAGATGCGGCAGCAGTGGCTTATGGATACTTTTCCAAGTCTGGGCTTGATCCTGTCCTTGAATCTTACCTTACAAAGGTTTCATCAAACCCTGGAGCTGGTGATATTCTGATGGGATTCTTGGGGTCTGTTATCCTCTCATTTGCTTTCTCAATGTTCCAACAGAGGAAGCTGGTCAAGAGGCATGCAGCAGAGATTTTCACATCTGTAATCGTATCGTGCATATTCTCATTGTATTCAACCGCTCTTATTGGACGTCTCGTTGGGTTAGAATCAAGTTTGACTGTCTCAATTCTACCACGATGTATAACCGTGGCATTAGCCCTCAGCATTGTGTCTTTATTCGAAGGTGCCAATTCATCTCTCACAGCTGCCGTTGTTGTAGTAACTGGTTTGGTTGGAGCTAATTTTGTACAGGCAACACTTGATAAACTACAGTTCCGAGATCCTATTGCTCGGGGAATAGCTACTGCATCTAGGTATGAATCTCTGCTGAACCCTCTGCATCAAATGGTCACATTGAAAATGATAGACAATGAAAACAAATCTTTTGAAACATCCTGGATATGCAGAAAATCAATTATGTTGAAATGCAGGTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006996 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009853 GO:0009941 GO:0009987 GO:0015075 GO:0015144 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0042170 GO:0042221 GO:0042493 GO:0042873 GO:0042879 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043879 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0097339 GO:0098656 GO:1900866 GO:1901618 GO:1901974 GO:1901975 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LrgB

Protein Analysis

374

Amino Acids

40.07

Weight (kDa)

9.01

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LrgB	PF04172	146 - 331	6.1e-29	LrgB-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32080
fragaria_vesca	FvH4_5g23540 FvH4_5g23540
malus_domestica	MD06G1023600.v1.1
prunus_persica	Prupe.5G024500_v2.0.a1
pyrus_communis	pycom06g01920
rosa_chinensis	RchiOBHm_Chr7g0212851
rosa_laevigata	RLG00000002865
rosa_multiflora	Rmu_sc0000394.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246510
rosa_rugosa	Rorug07G0137000
rosa_samantha	Rh7AG268600 Rh7BG264200 Rh7CG287600 Rh7DG276700
rosa_wichuraiana	Rw7G023210 Rw7G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	1104
AccB1I	GGYRCC	1 cut(s)	869
AccBSI	CCGCTC	1 cut(s)	764
AciI	CCGC	3 cut(s)	146, 527, 762
AclWI	GGATC	4 cut(s)	340, 353, 563, 959
AcyI	GRCGYC	1 cut(s)	775
AfaI	GTAC	1 cut(s)	933
AfiI	CCNNNNNNNGG	4 cut(s)	176, 561, 595, 617
AgsI	TTSAA	6 cut(s)	326, 581, 759, 1042, 1073, 1108
AjnI	CCWGG	2 cut(s)	610, 1079
AluBI	AGCT	8 cut(s)	63, 203, 227, 617, 691, 890, 923, 986
AluI	AGCT	8 cut(s)	63, 203, 227, 617, 691, 890, 923, 986
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	782, 811
AlwI	GGATC	4 cut(s)	340, 353, 563, 959
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	975
ApeKI	GCWGC	4 cut(s)	109, 530, 707, 890
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	632
AsuII	TTCGAA	1 cut(s)	864
AvaI	CYCGRG	1 cut(s)	975
BaeGI	GKGCMC	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	4 cut(s)	96, 542, 719, 877
BccI	CCATC	4 cut(s)	99, 136, 478, 625
BceAI	ACGGC	3 cut(s)	97, 258, 878
BciT130I	CCWGG	2 cut(s)	612, 1081
BciVI	GTATCC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	782, 811
BfaI	CTAG	3 cut(s)	224, 996, 1123
BfmI	CTRYAG	2 cut(s)	519, 953
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	1104
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	6 cut(s)	110, 146, 528, 531, 708, 891
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	111, 147, 529, 532, 709, 892
Bme1390I	CCNGG	3 cut(s)	170, 612, 1081
BmeT110I	CYCGRG	1 cut(s)	975
BmiI	GGNNCC	2 cut(s)	347, 871
BmrFI	CCNGG	3 cut(s)	170, 612, 1081
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	7 cut(s)	25, 189, 274, 440, 514, 1001, 1033
BmuI	ACTGGG	1 cut(s)	401
BpmI	CTGGAG	2 cut(s)	225, 633
Bpu10I	CCTNAGC	1 cut(s)	845
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	775
BsaJI	CCNNGG	3 cut(s)	168, 610, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 561, 595, 617
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	267, 396, 913
Bse8I	GATNNNNATC	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	612, 1081
BseDI	CCNNGG	3 cut(s)	168, 610, 831
BseGI	GGATG	2 cut(s)	431, 1076
BseJI	GATNNNNATC	1 cut(s)	469
BseLI	CCNNNNNNNGG	4 cut(s)	176, 561, 595, 617
BseMII	CTCAG	2 cut(s)	279, 859
BseNI	ACTGG	3 cut(s)	267, 396, 913
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	4 cut(s)	96, 542, 719, 877
BshNI	GGYRCC	1 cut(s)	869
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	975
BsiSI	CCGG	2 cut(s)	83, 170
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	4 cut(s)	176, 561, 595, 617
BsmAI	GTCTC	2 cut(s)	782, 811
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	975
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	406, 514
Bsp1407I	TGTACA	1 cut(s)	931
Bsp143I	GATC	3 cut(s)	345, 568, 964
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	146, 527, 762
BspCNI	CTCAG	2 cut(s)	280, 858
BspLI	GGNNCC	2 cut(s)	347, 871
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	1104
BspPI	GGATC	4 cut(s)	340, 353, 563, 959
BspT104I	TTCGAA	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	869
BsrBI	CCGCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	931
BsrI	ACTGG	3 cut(s)	267, 396, 913
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	168, 610, 831
BssMI	GATC	3 cut(s)	345, 568, 964
BssNI	GRCGYC	1 cut(s)	775
Bst2UI	CCWGG	2 cut(s)	612, 1081
Bst4CI	ACNGT	5 cut(s)	43, 439, 805, 832, 957
BstACI	GRCGYC	1 cut(s)	775
BstAUI	TGTACA	1 cut(s)	931
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	4 cut(s)	84, 212, 216, 705
BstDEI	CTNAG	2 cut(s)	288, 845
BstDSI	CCRYGG	1 cut(s)	831
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	431, 1076
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	348, 571, 967
BstMAI	GTCTC	2 cut(s)	782, 811
BstMBI	GATC	3 cut(s)	345, 568, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 518, 527, 536
BstNI	CCWGG	2 cut(s)	612, 1081
BstNSI	RCATGY	2 cut(s)	414, 707
BstSCI	CCNGG	3 cut(s)	168, 610, 1079
BstSFI	CTRYAG	2 cut(s)	519, 953
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	96, 542, 719, 877
BstX2I	RGATCY	2 cut(s)	345, 964
BstYI	RGATCY	2 cut(s)	345, 964
BsuI	GTATCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	2 cut(s)	431, 1076
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	39, 389, 435, 540
BveI	ACCTGC	1 cut(s)	1104
Cac8I	GCNNGC	4 cut(s)	84, 212, 216, 705
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	932
CviAII	CATG	3 cut(s)	330, 411, 704
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	2 cut(s)	288, 845
DpnI	GATC	3 cut(s)	347, 570, 966
DpnII	GATC	3 cut(s)	345, 568, 964
Eco88I	CYCGRG	1 cut(s)	975
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	610, 1079
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	3 cut(s)	333, 414, 707
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	329, 410, 703
Fnu4HI	GCNGC	6 cut(s)	110, 146, 528, 531, 708, 891
FokI	GGATG	2 cut(s)	418, 1063
Fsp4HI	GCNGC	6 cut(s)	110, 146, 528, 531, 708, 891
FspBI	CTAG	3 cut(s)	224, 996, 1123
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	6 cut(s)	110, 146, 528, 531, 708, 891
GsuI	CTGGAG	2 cut(s)	225, 633
HaeII	RGCGCY	1 cut(s)	89
HapII	CCGG	2 cut(s)	83, 170
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	775
Hin1II	CATG	3 cut(s)	333, 414, 707
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	4 cut(s)	581, 636, 791, 1004
HpaII	CCGG	2 cut(s)	83, 170
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	6 cut(s)	102, 257, 408, 475, 630, 962
Hpy188III	TCNNGA	5 cut(s)	32, 47, 184, 462, 697
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	425, 860
HpyCH4III	ACNGT	5 cut(s)	43, 439, 805, 832, 957
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	9 cut(s)	233, 431, 521, 707, 741, 992, 1024, 1089, 1113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 518, 527, 536
HpyF3I	CTNAG	2 cut(s)	288, 845
HpySE526I	ACGT	1 cut(s)	775
Hsp92I	GRCGYC	1 cut(s)	775
Hsp92II	CATG	3 cut(s)	333, 414, 707
HspAI	GCGC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	345, 568, 964
LmnI	GCTCC	3 cut(s)	368, 614, 920
Lsp1109I	GCAGC	4 cut(s)	96, 542, 719, 877
LweI	GCATC	7 cut(s)	25, 189, 274, 440, 514, 1001, 1033
MaeI	CTAG	3 cut(s)	224, 996, 1123
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	3 cut(s)	446, 904, 1033
MalI	GATC	3 cut(s)	347, 570, 966
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	3 cut(s)	345, 568, 964
MboII	GAAGA	3 cut(s)	309, 493, 496
MflI	RGATCY	2 cut(s)	345, 964
MhlI	GDGCHC	2 cut(s)	406, 514
MluCI	AATT	6 cut(s)	18, 498, 810, 874, 925, 1098
MmeI	TCCRAC	3 cut(s)	346, 703, 898
MnlI	CCTC	9 cut(s)	200, 316, 359, 362, 665, 678, 693, 854, 1029
MroNI	GCCGGC	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	2 cut(s)	83, 170
MspR9I	CCNGG	3 cut(s)	170, 612, 1081
MvaI	CCWGG	2 cut(s)	612, 1081
MwoI	GCNNNNNNNGC	4 cut(s)	224, 518, 527, 536
NaeI	GCCGGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	345, 568, 964
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	333, 414, 707
NlaIV	GGNNCC	2 cut(s)	347, 871
NmuCI	GTSAC	1 cut(s)	1033
NspI	RCATGY	2 cut(s)	414, 707
NspV	TTCGAA	1 cut(s)	864
PaeI	GCATGC	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	581, 636, 791, 1004
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	6 cut(s)	111, 147, 529, 532, 709, 892
Psp6I	CCWGG	2 cut(s)	610, 1079
PspGI	CCWGG	2 cut(s)	610, 1079
PspN4I	GGNNCC	2 cut(s)	347, 871
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	345, 964
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	6 cut(s)	110, 146, 528, 531, 708, 891
Sau3AI	GATC	3 cut(s)	345, 568, 964
ScrFI	CCNGG	3 cut(s)	170, 612, 1081
SduI	GDGCHC	2 cut(s)	406, 514
SfaNI	GCATC	7 cut(s)	25, 189, 274, 440, 514, 1001, 1033
SfcI	CTRYAG	2 cut(s)	519, 953
SfuI	TTCGAA	1 cut(s)	864
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	6 cut(s)	18, 498, 810, 874, 925, 1098
SsiI	CCGC	3 cut(s)	146, 527, 762
SspMI	CTAG	3 cut(s)	224, 996, 1123
StyD4I	CCNGG	3 cut(s)	168, 610, 1079
TaaI	ACNGT	5 cut(s)	43, 439, 805, 832, 957
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	864
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	6 cut(s)	18, 498, 810, 874, 925, 1098
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	2 cut(s)	148, 530
TfiI	GAWTC	4 cut(s)	581, 636, 791, 1004
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	4 cut(s)	46, 396, 442, 540
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	4 cut(s)	109, 530, 707, 890
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	5 cut(s)	85, 591, 867, 1017, 1071
TspRI	CASTG	4 cut(s)	46, 396, 442, 540
XagI	CCTNNNNNAGG	1 cut(s)	593
XceI	RCATGY	2 cut(s)	414, 707
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	224, 996, 1123
ZraI	GACGTC	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.