Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014623

Physical Location & Seq

Genomic Coordinates Forward (+)

10808765 .. 10809157

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATAACAACTTGCCCTGCTGCTGGAAATGAAAAACCACAAACTCCCAAGATGACCAAGTTGACTACCGGTGCCGAACTAGTAAGATCCTTTACTGGTTTCAAAGAACCTTATTTCACTAACGGAACTTTCAAGTCTCAGGGACTCCAGACCCAAGTGTTGCCATATGTGGCTAGAAACTTGTTTGGTAATGGAGGTAAAAATCTACGGCATGTCCTCCTCAAACCTACTGTGGAACATTCAAGCCACAGTACTAAAGGCTCAAGCAAGGACAATGAGAAGCTAGCGCTTGTGCCGGTGGAAGAAGTGCATAGTACTAAGAGGGAACGCCCAGCCTCACTGTTCTCGTACCCAAAAAAAGTTAAAACTTTTCTTCGAAGCACAACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006996 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009853 GO:0009941 GO:0009987 GO:0015075 GO:0015144 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0042170 GO:0042221 GO:0042493 GO:0042873 GO:0042879 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043879 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0097339 GO:0098656 GO:1900866 GO:1901618 GO:1901974 GO:1901975 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LrgB

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

10.05

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32080
fragaria_vesca	FvH4_5g23540 FvH4_5g23540
malus_domestica	MD06G1023600.v1.1
prunus_persica	Prupe.5G024500_v2.0.a1
pyrus_communis	pycom06g01920
rosa_chinensis	RchiOBHm_Chr7g0212851
rosa_laevigata	RLG00000002865
rosa_multiflora	Rmu_sc0000394.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246510
rosa_rugosa	Rorug07G0137000
rosa_samantha	Rh7AG268600 Rh7BG264200 Rh7CG287600 Rh7DG276700
rosa_wichuraiana	Rw7G023210 Rw7G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	253, 316, 350
AfeI	AGCGCT	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	103, 133, 243
AhlI	ACTAGT	1 cut(s)	79
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	376
AsuNHI	GCTAGC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	3 cut(s)	80, 174, 284
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	2 cut(s)	253, 316
BmiI	GGNNCC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	2 cut(s)	68, 295
Bse1I	ACTGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	69, 296
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	2 cut(s)	68, 295
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	2 cut(s)	68, 295
BssMI	GATC	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	232, 251, 342
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	138, 318
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	2 cut(s)	68, 295
Csp6I	GTAC	3 cut(s)	252, 315, 349
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	5 cut(s)	173, 246, 261, 283, 335
CviKI_1	RGCY	5 cut(s)	173, 246, 261, 283, 335
CviQI	GTAC	3 cut(s)	252, 315, 349
DdeI	CTNAG	2 cut(s)	138, 318
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	288
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	166, 168, 213, 312
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	80, 174, 284
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	21
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	290
HapII	CCGG	2 cut(s)	69, 296
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	2 cut(s)	69, 296
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	63
HpyCH4III	ACNGT	3 cut(s)	232, 251, 342
HpyCH4V	TGCA	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	138, 318
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	86
LpnPI	CCDG	9 cut(s)	9, 30, 81, 82, 125, 161, 309, 345, 372
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	80, 174, 284
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	314, 365
MflI	RGATCY	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	188, 227, 230, 315, 346
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	69, 296
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	3 cut(s)	253, 316, 350
RsaNI	GTAC	3 cut(s)	252, 315, 349
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	86
ScaI	AGTACT	2 cut(s)	253, 316
SchI	GAGTC	1 cut(s)	138
SetI	ASST	4 cut(s)	112, 199, 229, 285
SfuI	TTCGAA	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	79
SspMI	CTAG	3 cut(s)	80, 174, 284
TaaI	ACNGT	3 cut(s)	232, 251, 342
TaqI	TCGA	1 cut(s)	376
TatI	WGTACW	2 cut(s)	251, 314
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	345
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	3 cut(s)	80, 174, 284
ZrmI	AGTACT	2 cut(s)	253, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.