AT1G32130

Transcription elongation factor (TFIIS) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11558755 .. 11561920
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32130.1

Sequence Viewer

Length: 1509 bp
ATGGGTTTCGAGGATGATCCGTACCGTGATGTAGATGGAGAGCCAATAGTGGACTTTGATGATTTTGGGAATGATCGCGAGCCATCTACAGAGCCACTTCAGGATTTTGATGAAGATCTGGCTGATGATATTGGAGATTGGGATGGTGAAGGATCACAAACGCCTGTTTATGATAATGATAAAGTAGCTAAACCAAGGAAGAGATTGGTGAAGAAATCTTCTAGTGAACGTGTGACTATTGATGTTCCGGAATTGATTGATGAGGATGTGGATGATGCTGAGTTTGATGAGTTTATGGGAGGAAGAGGTGGTGGTAGTACTGATTATGATGATAAGGTTGGTAGGAAGAGGAAGAAGGAGAAAGAGAGAAGTAGTAGTGGTAGTGGGAAGGAGAAGAGGCATAAGTTTCCGAATCGTGGCGAAAGGAAGTCAGAAGAGATTGATGAGATGTGGAAATCTATTGCTCATAACCCAGAGAATGATGAAGAAGGTGTTAGGACTATGGATGATGATAATTTCATTGACGATACTGGTTTGGATCCTTCTGAGAGGTATGGAGGTGACGCTGGAGACCGTTCTCCAACTCATTATCCTCAGGCAGAAGAGGGTGAGGATGAAGATGAGGTAAATAACCTTTTCAAAATGGGGAAGAAAAAGAAAAAGACTGAAAGAAATCCTGCGGAAATTGCGCTTTTGGTTGAGAATGTGATGGCTGAGCTTGAGGTTACTGCTGAGGAAGATGCAGAACTTAATAGACAGGGGAAGCCTGCTATCAACAAGCTTAAGAAACTTTCGCTTCTTACCGATGTACTTGGAAAGAAGCAGCTTCAAACAGAATTCCTGGACCATGGAGTTTTAACCCTGTTGAAGAATTGGCTTGAGCCTCTTCCAGATGGAAGCTTGCCAAATATAAACATCCGTGCAGCTATTCTAAGAGTTCTTACTGATTTTCCGATTGACTTGGACCAGTATGATAGAAGGGAGCAATTGAAAAAGAGTGGGCTTGGAAAGGTCATTATGTTCTTATCAAAGTCCGACGAGGAAACTAATTCCAACAGACGACTTGCTAAGGATTTGGTTGATAAATGGTCTCGTCCAATTTTCAACAAGAGTACTAGGTTTGAGGACATGAGAAATCTCGATGAAGATAGGGTTCCCTATAGAAGACCACCAGTGAAGAAACCTAGCAACAAAGCGACAATGGAGTCCAGAGATGGTGACTTTGACTTGGAAATTCGGGAACGTAAAACTGGTCTGACTTCGGGTCAGAGTTCAAGGGGAGACAGGCAAATGACGATGAGGCCGGAAGCAACCCCATTGGACTTTTTGATCCGTCCTCAATCCAAGATTGATCCAGATGAGATCATAGCCCGTGCAAAACAGGTTTCTCAGGACCAGCGTCGGGTCAAGATGAACAAGAAACTTCAGCAGCTAAAAGGAACAAAGAAGAAGCGGCTACAAGCTACGAAAGTGAGCGTTGAAGGTCGGGGTATGATCAAGTACCTCTAG

Protein Analysis

502

Amino Acids

57.42

Weight (kDa)

5.11

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 327 - 367 1.5e-12 TFIIS helical bundle-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012255)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1204
AccII CGCG 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 2 cut(s) 680, 1453
AclWI GGATC 6 cut(s) 11, 160, 533, 546, 1324, 1346
AcsI RAATTY 2 cut(s) 836, 1233
AcuI CTGAAG 2 cut(s) 83, 1409
AfaI GTAC 5 cut(s) 23, 319, 810, 1114, 1502
AfiI CCNNNNNNNGG 2 cut(s) 416, 1402
AflII CTTAAG 1 cut(s) 782
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 7 cut(s) 640, 830, 868, 991, 1105, 1275, 1481
AhdI GACNNNNNGTC 1 cut(s) 1263
AjnI CCWGG 1 cut(s) 840
AluBI AGCT 8 cut(s) 188, 718, 781, 826, 900, 926, 1432, 1463
AluI AGCT 8 cut(s) 188, 718, 781, 826, 900, 926, 1432, 1463
Alw26I GTCTC 3 cut(s) 564, 1095, 1275
AlwI GGATC 6 cut(s) 11, 160, 533, 546, 1324, 1346
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 1301
ApeKI GCWGC 3 cut(s) 823, 923, 1429
ApoI RAATTY 2 cut(s) 836, 1233
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 3 cut(s) 844, 964, 1393
AsuHPI GGTGA 5 cut(s) 158, 220, 572, 620, 1229
AvaII GGWCC 3 cut(s) 844, 964, 1393
AxyI CCTNAGG 1 cut(s) 594
BamHI GGATCC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 1171
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 835, 935, 1441
BccI CCATC 6 cut(s) 29, 91, 137, 703, 887, 1208
BciT130I CCWGG 1 cut(s) 842
BclI TGATCA 1 cut(s) 1494
BcoDI GTCTC 3 cut(s) 564, 1095, 1275
BfaI CTAG 4 cut(s) 222, 1116, 1185, 1507
BfmI CTRYAG 2 cut(s) 87, 1159
BfrI CTTAAG 1 cut(s) 782
BglII AGATCT 1 cut(s) 115
BisI GCNGC 4 cut(s) 824, 924, 1430, 1454
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 4 cut(s) 825, 925, 1431, 1455
BmcAI AGTACT 2 cut(s) 319, 1114
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 3 cut(s) 844, 964, 1393
BmeRI GACNNNNNGTC 1 cut(s) 1263
BmgT120I GGNCC 3 cut(s) 844, 964, 1393
BmiI GGNNCC 2 cut(s) 540, 1155
BmrFI CCNGG 1 cut(s) 842
BmsI GCATC 2 cut(s) 265, 730
BoxI GACNNNNGTC 1 cut(s) 1398
BpiI GAAGAC 1 cut(s) 1171
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 2 cut(s) 732, 1068
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 740, 899
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 2 cut(s) 564, 1095
BsaJI CCNNGG 2 cut(s) 194, 847
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 1402
Bse1I ACTGG 4 cut(s) 535, 967, 1172, 1255
Bse21I CCTNAGG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 2 cut(s) 194, 847
BseGI GGATG 7 cut(s) 19, 148, 271, 277, 511, 619, 915
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 416, 1402
BseMII CTCAG 6 cut(s) 270, 537, 608, 705, 723, 1403
BseNI ACTGG 4 cut(s) 535, 967, 1172, 1255
BseXI GCAGC 3 cut(s) 835, 935, 1441
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 1303
BsiSI CCGG 2 cut(s) 248, 1304
BslI CCNNNNNNNGG 2 cut(s) 416, 1402
BsmAI GTCTC 3 cut(s) 564, 1095, 1275
BsnI GGCC 1 cut(s) 1303
Bso31I GGTCTC 2 cut(s) 564, 1095
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 847
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 2 cut(s) 680, 1453
BspANI GGCC 1 cut(s) 1303
BspCNI CTCAG 6 cut(s) 271, 538, 607, 706, 724, 1402
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 540, 1155
BspPI GGATC 6 cut(s) 11, 160, 533, 546, 1324, 1346
BspTI CTTAAG 1 cut(s) 782
BspTNI GGTCTC 2 cut(s) 564, 1095
BsrI ACTGG 4 cut(s) 535, 967, 1172, 1255
BssECI CCNNGG 2 cut(s) 194, 847
BssMI GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
BssT1I CCWWGG 2 cut(s) 194, 847
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 2 cut(s) 26, 575
Bst6I CTCTTC 7 cut(s) 194, 298, 341, 389, 429, 597, 891
BstAFI CTTAAG 1 cut(s) 782
BstC8I GCNNGC 3 cut(s) 80, 768, 902
BstDEI CTNAG 8 cut(s) 279, 546, 594, 714, 732, 932, 1068, 1389
BstDSI CCRYGG 1 cut(s) 847
BstF5I GGATG 7 cut(s) 19, 148, 271, 277, 511, 619, 915
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 9 cut(s) 19, 76, 118, 155, 541, 1332, 1354, 1365, 1497
BstMAI GTCTC 3 cut(s) 564, 1095, 1275
BstMBI GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 842
BstPAI GACNNNNGTC 1 cut(s) 1398
BstSCI CCNGG 1 cut(s) 840
BstSFI CTRYAG 2 cut(s) 87, 1159
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 835, 935, 1441
BstV2I GAAGAC 1 cut(s) 1171
BstX2I RGATCY 2 cut(s) 115, 538
BstYI RGATCY 2 cut(s) 115, 538
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 1 cut(s) 1303
BtgI CCRYGG 1 cut(s) 847
BtsCI GGATG 7 cut(s) 19, 148, 271, 277, 511, 619, 915
BtsIMutI CAGTG 1 cut(s) 1179
BtuMI TCGCGA 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 80, 768, 902
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 3 cut(s) 844, 964, 1393
CseI GACGC 2 cut(s) 572, 1388
Csp6I GTAC 5 cut(s) 22, 318, 809, 1113, 1501
CviAII CATG 2 cut(s) 848, 1129
CviQI GTAC 5 cut(s) 22, 318, 809, 1113, 1501
DdeI CTNAG 8 cut(s) 279, 546, 594, 714, 732, 932, 1068, 1389
DpnI GATC 9 cut(s) 18, 75, 117, 154, 540, 1331, 1353, 1364, 1496
DpnII GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
DrdI GACNNNNNNGTC 1 cut(s) 1204
DriI GACNNNNNGTC 1 cut(s) 1263
DseDI GACNNNNNNGTC 1 cut(s) 1204
Eam1104I CTCTTC 7 cut(s) 194, 298, 341, 389, 429, 597, 891
Eam1105I GACNNNNNGTC 1 cut(s) 1263
EarI CTCTTC 7 cut(s) 194, 298, 341, 389, 429, 597, 891
Eco130I CCWWGG 2 cut(s) 194, 847
Eco31I GGTCTC 2 cut(s) 564, 1095
Eco47I GGWCC 3 cut(s) 844, 964, 1393
Eco57I CTGAAG 2 cut(s) 83, 1409
Eco81I CCTNAGG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 836
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 194, 847
ErhI CCWWGG 2 cut(s) 194, 847
FaeI CATG 2 cut(s) 851, 1132
FatI CATG 2 cut(s) 847, 1128
FbaI TGATCA 1 cut(s) 1494
Fnu4HI GCNGC 4 cut(s) 824, 924, 1430, 1454
FokI GGATG 7 cut(s) 26, 155, 278, 284, 518, 626, 902
Fsp4HI GCNGC 4 cut(s) 824, 924, 1430, 1454
FspBI CTAG 4 cut(s) 222, 1116, 1185, 1507
GlaI GCGC 1 cut(s) 690
GluI GCNGC 4 cut(s) 824, 924, 1430, 1454
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 1303
HapII CCGG 2 cut(s) 248, 1304
HgaI GACGC 2 cut(s) 572, 1388
HhaI GCGC 1 cut(s) 691
Hin1II CATG 2 cut(s) 851, 1132
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HindIII AAGCTT 2 cut(s) 779, 898
HinfI GANTC 2 cut(s) 412, 1205
HpaII CCGG 2 cut(s) 248, 1304
HphI GGTGA 5 cut(s) 158, 220, 572, 620, 1229
Hpy166II GTNNAC 2 cut(s) 52, 227
Hpy188I TCNGA 7 cut(s) 411, 433, 547, 954, 1036, 1257, 1269
Hpy8I GTNNAC 2 cut(s) 52, 227
Hpy99I CGWCG 2 cut(s) 1040, 1404
HpyAV CCTTC 7 cut(s) 143, 349, 382, 482, 552, 972, 1475
HpyCH4III ACNGT 2 cut(s) 26, 575
HpyCH4IV ACGT 2 cut(s) 229, 1243
HpyCH4V TGCA 3 cut(s) 743, 923, 1376
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 8 cut(s) 279, 546, 594, 714, 732, 932, 1068, 1389
HpySE526I ACGT 2 cut(s) 229, 1243
Hsp92II CATG 2 cut(s) 851, 1132
HspAI GCGC 1 cut(s) 689
Kpn2I TCCGGA 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 1494
Kzo9I GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
LmnI GCTCC 1 cut(s) 982
Lsp1109I GCAGC 3 cut(s) 835, 935, 1441
LweI GCATC 2 cut(s) 265, 730
MaeI CTAG 4 cut(s) 222, 1116, 1185, 1507
MaeII ACGT 2 cut(s) 229, 1243
MaeIII GTNAC 4 cut(s) 232, 560, 724, 1217
MalI GATC 9 cut(s) 18, 75, 117, 154, 540, 1331, 1353, 1364, 1496
MboI GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 115, 538
MluCI AATT 9 cut(s) 251, 514, 684, 836, 871, 986, 1048, 1098, 1233
MlyI GAGTC 1 cut(s) 1214
MmeI TCCRAC 3 cut(s) 605, 1059, 1077
MroI TCCGGA 1 cut(s) 247
MseI TTAA 3 cut(s) 750, 783, 857
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 2 cut(s) 248, 1304
MspR9I CCNGG 1 cut(s) 842
MunI CAATTG 1 cut(s) 986
MvaI CCWGG 1 cut(s) 842
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 686
NcoI CCATGG 1 cut(s) 847
NdeII GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
NlaIII CATG 2 cut(s) 851, 1132
NlaIV GGNNCC 2 cut(s) 540, 1155
NmuCI GTSAC 3 cut(s) 232, 560, 1217
NruI TCGCGA 1 cut(s) 78
PfeI GAWTC 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 840
PkrI GCNGC 4 cut(s) 825, 925, 1431, 1455
PleI GAGTC 1 cut(s) 1213
PpsI GAGTC 1 cut(s) 1213
PshAI GACNNNNGTC 1 cut(s) 1398
Psp6I CCWGG 1 cut(s) 840
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 2 cut(s) 540, 1155
PspPI GGNCC 3 cut(s) 844, 964, 1393
PsuI RGATCY 2 cut(s) 115, 538
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 5 cut(s) 23, 319, 810, 1114, 1502
RsaNI GTAC 5 cut(s) 22, 318, 809, 1113, 1501
SaqAI TTAA 3 cut(s) 750, 783, 857
SatI GCNGC 4 cut(s) 824, 924, 1430, 1454
Sau3AI GATC 9 cut(s) 16, 73, 115, 152, 538, 1329, 1351, 1362, 1494
Sau96I GGNCC 3 cut(s) 844, 964, 1393
ScaI AGTACT 2 cut(s) 319, 1114
SchI GAGTC 1 cut(s) 1214
ScrFI CCNGG 1 cut(s) 842
SfaNI GCATC 2 cut(s) 265, 730
SfcI CTRYAG 2 cut(s) 87, 1159
SinI GGWCC 3 cut(s) 844, 964, 1393
SmlI CTYRAG 3 cut(s) 719, 782, 878
SmoI CTYRAG 3 cut(s) 719, 782, 878
Sse9I AATT 9 cut(s) 251, 514, 684, 836, 871, 986, 1048, 1098, 1233
SsiI CCGC 2 cut(s) 680, 1453
SspMI CTAG 4 cut(s) 222, 1116, 1185, 1507
StyD4I CCNGG 1 cut(s) 840
StyI CCWWGG 2 cut(s) 194, 847
TaaI ACNGT 2 cut(s) 26, 575
TaiI ACGT 2 cut(s) 232, 1246
TaqI TCGA 2 cut(s) 9, 1140
TasI AATT 9 cut(s) 251, 514, 684, 836, 871, 986, 1048, 1098, 1233
TatI WGTACW 3 cut(s) 317, 808, 1112
TauI GCSGC 1 cut(s) 1456
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 3 cut(s) 750, 783, 857
Tru9I TTAA 3 cut(s) 750, 783, 857
TscAI CASTG 1 cut(s) 1179
TseFI GTSAC 3 cut(s) 232, 560, 1217
TseI GCWGC 3 cut(s) 823, 923, 1429
Tsp45I GTSAC 3 cut(s) 232, 560, 1217
TspDTI ATGAA 6 cut(s) 126, 498, 508, 630, 1158, 1427
TspGWI ACGGA 3 cut(s) 9, 908, 1322
TspRI CASTG 1 cut(s) 1179
Vha464I CTTAAG 1 cut(s) 782
VpaK11BI GGWCC 3 cut(s) 844, 964, 1393
XapI RAATTY 2 cut(s) 836, 1233
XspI CTAG 4 cut(s) 222, 1116, 1185, 1507
ZrmI AGTACT 2 cut(s) 319, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.