Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012255

Physical Location & Seq

Genomic Coordinates Forward (+)

10403271 .. 10406703

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAAGAGAGGTACTGGCGTTACTACTACTATTATGCATGAATCTGCAGCATTACTATGCGGTACAAATTTGTACGTTAAAAAGCCAAAAGAAGATGTTGATGATGAACTACTTAGGGCGGTTAATGGTGATCTCAGCTATGATATCGACTCTGCCCCACTAGTCTCAGCCGGAATTGATGATGAACACGATGAAGAACCTGAGGATGATCTTGTAAATCATCCTGAGATTCCTGGATGGTTTTCTGAGTATTGTCCAGTTTGGCCAGGGCAAGCACACTTTTTGAAGGTAGAAAAGATCTTATTTCAAGGGAAGTCCCAGTACCAAAGTATGATGGTATTTCAGTCATCAGCATATGGGAAGGTTTTTGTTCTGGATGGAGCCCTGCAACTCACTGAAAAGGATGAGTGTGCTTACCAAGAAATGATTACACATCTTCCTCTTTGCTCCATTCCAAACCCTAAAAAGGTATTACTCATTGGAGGAGGAGATGGCGGAATTTTAAGGGAAATTTCTCGACACTCTTCTGTTGAGCAGATTGATATATGCGAAATAGACACCATGTTAGTTGATATCTACAAGAAATTTTTTCCTGATGTTGCTATTGGATACAAGGACCCTCGGGTAACTCTTCATGTTAAAGATGGTACTGAATTTTGTAAGTACGTTCCAGAAGGAACATATGATGCAATTATAGTGGACGCATTTGACCCAATAAGGCCTGGTCATGAGCTTCTTGATGATGAGACTCCCTTCTTTGAACTGGTGAGAAAAGCTCTCCGCCCTGGAGGAGTCATGTGCATCCAAGCAGAAAGCATATGGTTTCGCTCCTTCCAGGTTGATGAACTCGTTGCAAAATGTCGCCAAATTTTCGAAGGCTCTGTTGACTATGCTTGGACAATTGTTCCAGCATATCCAAGTGGGGTGATTGGTTTCTTGCTTTGCTCCAAGGAGGGGTCATACGTGAACTTCAGAAATCCTATCAACCCGATTAACCCCAACAATAGTTACGGAGTATCAAAAGAGCCCTTGAAATTTTACAATTCAGAGGTACACATGGCTGCATTTTGTTTGCCATCGTTTGCGAAGAAGGTGACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000414 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010793 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032386 GO:0032784 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0033157 GO:0035065 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046822 GO:0046825 GO:0046831 GO:0050684 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0080090 GO:0090087 GO:0090239 GO:1901983 GO:1902275 GO:1903311 GO:1903506 GO:1903827 GO:2000112 GO:2000197 GO:2000756 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

368

Amino Acids

41.23

Weight (kDa)

4.81

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	80 - 134	2e-20	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	137 - 324	5.9e-63	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32130 AT1G32130
fragaria_vesca	FvH4_5g23250
malus_domestica	MD06G1038400.v1.1 MD16G1270500.v1.1
prunus_persica	Prupe.5G026700_v2.0.a1 Prupe.5G026700_v2.0.a1
pyrus_communis	pycom06g03210 pycom16g23940
rosa_chinensis	RchiOBHm_Chr7g0212171
rosa_laevigata	RLG00000002920
rosa_multiflora	Rmu_sc0002283.1_g000053
rosa_roxburghii	Rroxscaffold_3G00247050
rosa_rugosa	Rorug07G0131800 Rorug07G0131900
rosa_samantha	Rh7AG264700 Rh7CG281200 Rh7DG271100
rosa_wichuraiana	Rw7G022600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	63, 122, 498, 784
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
AcuI	CTGAAG	1 cut(s)	958
AfaI	GTAC	7 cut(s)	16, 67, 77, 326, 652, 668, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	469, 957
AgsI	TTSAA	4 cut(s)	289, 311, 764, 1036
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	5 cut(s)	235, 268, 724, 787, 837
AluBI	AGCT	3 cut(s)	141, 736, 779
AluI	AGCT	3 cut(s)	141, 736, 779
Alw26I	GTCTC	2 cut(s)	172, 743
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	266, 722
ApeKI	GCWGC	2 cut(s)	50, 1064
ApoI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	3 cut(s)	143, 781, 940
AsuII	TTCGAA	1 cut(s)	876
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	619
AxyI	CCTNAGG	1 cut(s)	204
BaeI	ACNNNNGTAYC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	388, 1032
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbvI	GCAGC	2 cut(s)	62, 1051
BccI	CCATC	6 cut(s)	234, 331, 374, 488, 641, 1087
BciT130I	CCWGG	5 cut(s)	237, 270, 726, 789, 839
BciVI	GTATCC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	172, 743
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	605
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	51, 1065
BlsI	GCNGC	2 cut(s)	52, 1066
Bme1390I	CCNGG	5 cut(s)	237, 270, 726, 789, 839
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	385, 621
BmrFI	CCNGG	5 cut(s)	237, 270, 726, 789, 839
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	679, 813
BmuI	ACTGGG	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	967
BsaJI	CCNNGG	4 cut(s)	269, 623, 787, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 957
Bse1I	ACTGG	4 cut(s)	22, 260, 322, 771
Bse21I	CCTNAGG	1 cut(s)	204
BseBI	CCWGG	5 cut(s)	237, 270, 726, 789, 839
BseDI	CCNNGG	4 cut(s)	269, 623, 787, 951
BseGI	GGATG	6 cut(s)	214, 223, 245, 385, 412, 804
BseLI	CCNNNNNNNGG	2 cut(s)	469, 957
BseMII	CTCAG	5 cut(s)	151, 183, 195, 219, 240
BseNI	ACTGG	4 cut(s)	22, 260, 322, 771
BseRI	GAGGAG	3 cut(s)	501, 504, 807
BseXI	GCAGC	2 cut(s)	62, 1051
BshFI	GGCC	2 cut(s)	268, 724
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	469, 957
BsmAI	GTCTC	2 cut(s)	172, 743
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	268, 724
BsoBI	CYCGRG	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	388, 1032
Bsp143I	GATC	3 cut(s)	133, 211, 300
BspACI	CCGC	4 cut(s)	63, 122, 498, 784
BspANI	GGCC	2 cut(s)	268, 724
BspCNI	CTCAG	5 cut(s)	150, 182, 196, 220, 241
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	385, 621
BspMAI	CTGCAG	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	876
BsrI	ACTGG	4 cut(s)	22, 260, 322, 771
BssECI	CCNNGG	4 cut(s)	269, 623, 787, 951
BssMI	GATC	3 cut(s)	133, 211, 300
BssT1I	CCWWGG	1 cut(s)	951
Bst2UI	CCWGG	5 cut(s)	237, 270, 726, 789, 839
Bst6I	CTCTTC	3 cut(s)	2, 532, 639
BstBAI	YACGTR	1 cut(s)	967
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	6 cut(s)	116, 137, 169, 204, 228, 249
BstF5I	GGATG	6 cut(s)	214, 223, 245, 385, 412, 804
BstKTI	GATC	3 cut(s)	136, 214, 303
BstMAI	GTCTC	2 cut(s)	172, 743
BstMBI	GATC	3 cut(s)	133, 211, 300
BstNI	CCWGG	5 cut(s)	237, 270, 726, 789, 839
BstSCI	CCNGG	5 cut(s)	235, 268, 724, 787, 837
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 1051
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	268, 724
BtsCI	GGATG	6 cut(s)	214, 223, 245, 385, 412, 804
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	6 cut(s)	41, 565, 638, 731, 799, 1060
CviQI	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
DdeI	CTNAG	6 cut(s)	116, 137, 169, 204, 228, 249
DpnI	GATC	3 cut(s)	135, 213, 302
DpnII	GATC	3 cut(s)	133, 211, 300
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	2, 532, 639
EarI	CTCTTC	3 cut(s)	2, 532, 639
EciI	GGCGGA	2 cut(s)	513, 773
Eco130I	CCWWGG	1 cut(s)	951
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	2 cut(s)	388, 1032
Eco32I	GATATC	2 cut(s)	148, 577
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	958
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	5 cut(s)	235, 268, 724, 787, 837
EcoRV	GATATC	2 cut(s)	148, 577
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	2 cut(s)	388, 1032
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	6 cut(s)	40, 564, 637, 730, 798, 1059
FauNDI	CATATG	3 cut(s)	358, 685, 821
Fnu4HI	GCNGC	2 cut(s)	51, 1065
FokI	GGATG	6 cut(s)	210, 221, 252, 392, 419, 791
FriOI	GRGCYC	2 cut(s)	388, 1032
Fsp4HI	GCNGC	2 cut(s)	51, 1065
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	51, 1065
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	268, 724
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	713
Hin1II	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	5 cut(s)	44, 152, 232, 751, 795
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	143, 781, 940
Hpy166II	GTNNAC	4 cut(s)	703, 889, 970, 1057
Hpy188I	TCNGA	3 cut(s)	250, 977, 1051
Hpy188III	TCNNGA	7 cut(s)	227, 377, 519, 596, 674, 731, 740
Hpy8I	GTNNAC	4 cut(s)	703, 889, 970, 1057
HpyAV	CCTTC	7 cut(s)	283, 358, 671, 766, 844, 872, 1087
HpyCH4IV	ACGT	3 cut(s)	78, 669, 966
HpyCH4V	TGCA	7 cut(s)	40, 50, 391, 692, 804, 857, 1067
HpyF3I	CTNAG	6 cut(s)	116, 137, 169, 204, 228, 249
HpySE526I	ACGT	3 cut(s)	78, 669, 966
Hsp92II	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
Kzo9I	GATC	3 cut(s)	133, 211, 300
LmnI	GCTCC	4 cut(s)	383, 455, 836, 953
Lsp1109I	GCAGC	2 cut(s)	62, 1051
LweI	GCATC	2 cut(s)	679, 813
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	3 cut(s)	78, 669, 966
MaeIII	GTNAC	4 cut(s)	22, 628, 1010, 1096
MalI	GATC	3 cut(s)	135, 213, 302
MboI	GATC	3 cut(s)	133, 211, 300
MboII	GAAGA	7 cut(s)	19, 107, 209, 431, 519, 626, 1102
MfeI	CAATTG	1 cut(s)	903
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	388, 1032
MlsI	TGGCCA	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	3 cut(s)	146, 745, 804
MnlI	CCTC	9 cut(s)	5, 199, 453, 479, 482, 633, 785, 949, 1045
Mox20I	TGGCCA	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	5 cut(s)	81, 126, 506, 642, 996
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	268
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	5 cut(s)	237, 270, 726, 789, 839
MunI	CAATTG	1 cut(s)	903
MvaI	CCWGG	5 cut(s)	237, 270, 726, 789, 839
NdeI	CATATG	3 cut(s)	358, 685, 821
NdeII	GATC	3 cut(s)	133, 211, 300
NlaIII	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
NlaIV	GGNNCC	2 cut(s)	385, 621
NmuCI	GTSAC	1 cut(s)	1096
NsiI	ATGCAT	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	876
PagI	TCATGA	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	44, 232
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	52, 1066
PleI	GAGTC	3 cut(s)	146, 745, 803
PpsI	GAGTC	3 cut(s)	146, 745, 803
Ppu21I	YACGTR	1 cut(s)	967
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	5 cut(s)	235, 268, 724, 787, 837
PspGI	CCWGG	5 cut(s)	235, 268, 724, 787, 837
PspN4I	GGNNCC	2 cut(s)	385, 621
PspPI	GGNCC	1 cut(s)	619
PspPPI	RGGWCCY	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	7 cut(s)	16, 67, 77, 326, 652, 668, 1056
RsaNI	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
RseI	CAYNNNNRTG	1 cut(s)	58
SaqAI	TTAA	5 cut(s)	81, 126, 506, 642, 996
SatI	GCNGC	2 cut(s)	51, 1065
Sau3AI	GATC	3 cut(s)	133, 211, 300
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	3 cut(s)	146, 745, 804
ScrFI	CCNGG	5 cut(s)	237, 270, 726, 789, 839
SduI	GDGCHC	2 cut(s)	388, 1032
SfaNI	GCATC	2 cut(s)	679, 813
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	876
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	58
SpeI	ACTAGT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	4 cut(s)	63, 122, 498, 784
SspMI	CTAG	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	5 cut(s)	235, 268, 724, 787, 837
StyI	CCWWGG	1 cut(s)	951
TaiI	ACGT	3 cut(s)	81, 672, 969
TaqI	TCGA	3 cut(s)	150, 520, 876
TfiI	GAWTC	2 cut(s)	44, 232
Tru1I	TTAA	5 cut(s)	81, 126, 506, 642, 996
Tru9I	TTAA	5 cut(s)	81, 126, 506, 642, 996
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	1096
TseI	GCWGC	2 cut(s)	50, 1064
Tsp45I	GTSAC	1 cut(s)	1096
TspDTI	ATGAA	6 cut(s)	57, 123, 201, 210, 626, 861
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.